RNA id: XM_022682657.1



Basic Information


Item Value
RNA id XM_022682657.1
length 5576
RNA type mRNA
GC content 0.54
exon number 28
gene id LOC103025998
representative True

Chromosome Information


Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22996094 ~ 23028601 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CGTTTCCTAAAGTGGCTGAGGATGTTAATAGTGGGAGTTCAGGTGTGATCAGTGAGTGTAATGTTGGAGATTCGGCTGTAACTCTTTATTTTCTTCCACTTTGAGCAGTTTAGCAGTTTCTACATGTCCTCATCTGGATGCAGTTCCCCAGAATGACCCAGCCTCGACCCAGCGAGTTTATTCCGCCGCCGGAGTGCCCTGTGTTTGAGCCCAGTTGGGAAGAATTCTCCGACCCGTTCGGCTTCATCAACAAGATCCGCTCCATCGCAGAGAACACCGGCATCTGTAAGATCCGCCCGCCGCCGGGCTGGCAGCCACCATTTGCCTGTGATGTGGACAGACTGCACTTCACCCCTCGCATCCAGCGTCTGAACGAGCTGGAGGCTCAGACCCGAGTCAGGCTCAACTTTCTGGACCAGATTGCCAAGTTCTGGGAGCTGCAGGGCTGCACGCTGAAAATCCCTCACGTGGAGCGCAAGTCTCTGGACCTCTACCAGCTCTACAAGGTGGTGTCGGAGGAGGGTGGCTTTGAACAGGTCTGTAAAGAGCGGAAATGGACCCAGATCTCAACGAGGCTGGGCTTTGCCCCAGGCAAGGCTGTAGGTTCTCATCTGCGGTCCCACTACGAGAGGGTGCTGTACCCGTACTACCTGTTCCAGATCGGGGTCAACCTTTTGacCTCACAGAAGCCCACGCTCACCAACGACACCAAAGATAAGGAGTATAAATCTCATGATTTACCCCAGCGCCAGTCAGTTCAGCCGGCCGAGACCACCACCATCGCCCGCAGAGCAAAGCGCACCGAGGGCCGCTGCGTCAAAACGGAGCAGGGCGAGCCGTGTGAGAACCGACCCAACCTGAGGAGAAGGATGGGCTCTTGTGTGGCAAAATCTGAACCAgTTCTTAACATTCCAGTCCAGGTCAAACAGGAGCCTGTGGAGCTGGCTGTACCTGCACCACCTGAGGGAGAAAAGTCAAAGGTGGAGCAGTACATATGTTTGgtgtgtgggggtgggggtgatgAGGACCGCCTGCTGCTGTGTGATGGGTGTGATGACAGTTACCACACATTCTGTCTGATCCCACCACTCCACGATGTTCCCAAAGGGGACTGGAGATGCCCCAAGTGCCTGGCCCAGGAGTGTGGAAAGCCTCAGGTGGCGTTCGGGTTTGAGCAGGCCTCCCGGGACTATACCCTCCGCTCTTTTGGAGACATGGCAGACTCCTTCAAGTCGGACTATTTCAACATGCCTGTTCACATGGTTCCTACAGAGCTGGTGGAGAAGGAGTTCTGGCGTCTGGTCAGCACCATAGAGGAAGACGTGACTGTAGAGTATGGGGCAGATATTGCGTCCAAGGACTTTGGAAGTGGTTTCCCTGTTAAAAACGGCTCCTTCAAGGTCACACCTGATGAAGAGCATTATGTCACAAGCGGCTGGAACCTGAACAACATGCCAGTGCTGGACTCGTCGGTGCTGACTCATATTACAGCCGACATATGTGGCATGAAGCTGCCCTGGCTCTATGTTGGCATGTGCTTCTCCTCATTCTGCTGGCACATTGAGGATCACTGGAGCTACTCCATCAACTATCTGCACTGGGGCGAGCCGAAGACGTGGTACGGTGCCCCCGGCTACGCTGCGGAGCAATTGGAGATGGTAATGAAGAAACTGGCTCCCGAGCTCTTTGAGTCCCAGCCAGATCTGCTCCACCAGCTGGTCACCATCATGAACCCCAATCTCCTAATGGAGCATGGCGTCCCGatCTACCGTACTAATCAGTGTGCGGGAGAGTTCGTCATCACCTTCCGAGCCTATCACAGCGGCTTCAACCAGGGCTTTAACTTCGCAGAGGCAGTGAACTTCTGCACAGTGGACTGGATGTCTCTGGGCCGGCAGTGTGTGGCGCATTACCGCTCCCTGAACAGATACTGCGTCTTCTCCCATGATGAGATGGTGTGTAACATCGCAGCCAAAGCAGACAACCTGGATCTTGTGCTGGCGTGCGCCATCCAGAAGGACATGAGCGCCAtgatggaggaggagaaggagctGCGGGAGAGGGCCTACAAGCTGGGGGTGTGGCATTCCCAGCAGGTGGATTATGAGGAGCTGCCAGACGAGGAGCGGCAGTGTATAAAGTGCAGGACCACCTGTTTCCTGTCTGCAATCACCTGCCCCTGCAGCCCCACCCAGCTGGTCTGTCTGCACCACCTGCAGGACCTGTGCTCCTGTGCCTGCAGCAACTACACACTGAAttatAAATACACACTGGGCTTGTTAAATCAGATGTTTAAGTCTGTGGCGGGGCGTGCTGTGTCGTATGATGACTGGGCTTCTAAGGTTAACAAGATGTTAAAACCTGAGCGGGAGAAAAACGATGTGGAAGATCTCCGGGCGCTAATGGTGGAGGCGGAGAAGAAGATGTACCCTGAAATGGACCTGCTGCGGCATTTACGGCAGATCATCCAGGAGGCAGAGAAGAGTGCGGCGATGGCCCAGCAGCTCCTTAACGGCAAAAGGCAGACCCGgtatCGGACCGGAGGAGGGAAGTCTCAGAATCAGCTTACTGTGGAGGAGCTGAGGTCATTCATACAGCAGCTCTATGATCTGCCTTGCACCATCCGACAGGTTCCCTTCCTTAAGGCTCTGCTGACCCGTATTGAGGAGTTTCAGGCGCGTAGTGCTGATCTCCTGGCGGAGGACATGCCCGGCTCGTCGGCGCTCCAGGGCTTGGTGGACGAGGGCGCCGGGCTGGACGTGGAGTTGCCTGAGCTGGCGGTGCTCAGGCAGAGGCTGGAGCAAGCCCGGTGGGTGGAGGCGGTGCAGCAGGCCGGCGAGCAGCCGGCCAGCCTCAGCCTGGACTGCATGCGGAGGCTGATCGACCAGGGCGTCGGGCTGTCGGCCCACGCCTGCGTGGAGCGCACCATGGCCCGGCTGCAGGAGCTGCTCACCGTCTGCGAGCACTGGGAGGAGAAGGCCCACAACATGCTCACGGCCAGGCCTCGCTGTAGTCTGGACAGTCTGGAGACGGCCCTGCAGGAGGTAAACAGTATTCACGCTTACCTTCCCAACTGCCTTCAGCTCAAAGACTCGGTTAGCAGGGCTCGAGAGTGGATACGAGAAGCTGATGCACTTCAGTTTGGAGGACGTGTCCCTGTTCTTGCATCCTTGTCTGACCTGGTCTCAAAAGCTAAGGGCATCCCAGTCCTTCTGGAGCCCCTGGCCCGGCTGGAGAGCCTGGTTTCGGAGGTGCAAGCCTGGAAGGAAAGTGCAGCTAAAACGTTTTTGTTGAAGAACTCGTCCCTTTCGCTCCTGGAGGTCCTGTGCCCGAGGTGTGAGACGGGTTGTCCGAAATCGAGATCTAAACGAGTGAAGGAAGTCTCGCCGACAGGGAAGAAGCCTGTAAAACTGGAGTGTCTAAGTGATGTGGAACGAGCTCTGTGTGAGAGTAAAGACACGGCCTCTGCGATGGCGACTCTTGGTGAGGTTCATCAGAAGGAGCTGGAGAGCCTGTCTATCCTGAGGACCACGAACGAGACGAAATTTCATCCCACGCCCAACAGCTCGGCACCTACGGTGTGCTTGTGCCACACGGTGCCCGCTGGCCCCATGCTCCAGTGTGAACTTTGCCGCGATTCTTACCACAGCGGATGCGTGCCGGGCTTCCAGGAGACGCAGGCTGACCAGCCGTGGCTGTGCCCGCTCTGCAGTCGGTCCGAGAAGCCCCCCTTGGACAAGGTGCTGCCCCTGCTAGCTTCGTTGCAGCGGATCAGAGTCCGGCTCCCAGAGGGTGATGCGCTGCGCTACGTAATCGAGAGGACGGTGCGGTGGCAACACAAAGTGCAGCAAGTCTCACCTTTTACGCAGCAGTATAGTGGAAAGATGAGAGCTTCCTCTGGAATAGCGTCAACCCTGAGCCTGGAAGGGAGTAGTGGATCCTTCTACATGCAGCACTCCTGTATTCCTCTCAGCGTTCTGAGTCCAGagctggaggagctgctggtggaAGGCCTCCTGCTGCAGGTTACTCTTCccgagctccagcagctctatCAGGGCCTGCTCAGCCGGTTCTCCCCCTTCCATCACCTCCTGCAGAGCAGTGAGCACGACCATCAGTACCACATCGCCCAGGACAGGAGTCCCCTTCACAGAAGCCCACCACACAAGAGCCCACTCAACAGAAGCCCACCCCATAAGAGCCCGAGCCACAGAAGCCCACCCCAGAAGAGTCCAGCTTCTACAAGTCCACCTCATCAAAGCCCTCCCCACAGGAGCCCTCCCCACAGGAGCCCTCCCCACCGGAGCCCTCCCCACAAGAGCCCCACACATAAAAGCCCACCCCACAGTAAAGGACAGGATGTAGTTTTCGAGTTGCGGAAGGAAAGTGAGAAGCCAGAGAAGCATCCTAAGAGGCGTCTGGAGAAGGAGAACCCTGATGTGCAAGACAGAGACAAGATCAAAAAGCCCAAGAAAAAGAAGCCCAAGACTAACAAGGAGAGGAGACGTGAGGAGAAACGAACCATCTCCCCATCCAATTCCCTCTCAGATCCATCCTACTCCGACGATTCTGAAGAGGACTGGTCCGTGTGCTCAGCAAAGCGGTGTCTGCAGCCAGAGGGCAACGAGGTAAACTGGGTCCAGTGTGATGGCAGTTGTAACCAGTGGTTTCAccaagtgtgtgtgggtgtgtctgcTGAGCAGGCCGAAAACGAGGACTACATCTGCGTCAACTGCTCGAGAAAAAAACTGACACAATGAGGACCAAAACTGAAAGGCTTTGTGGAGTCTAATGACTTTTGAGTTTTGCACATGAGTTATAGCACCAAGTATGCACCACGTCCCGCTCCCCTGCCCTCAGATGTCCCGGCCCATCCTCCCTGTTGCTCCGGTGCTACTTTCTTCTCGATAGGACTGTTATCCCAAACCATTAAAGACCCTTGTCGCCTTTTTTCTGGTATTTTTACATTTCCTCCTATAAACTTTCTTTCTCTTGTCTAGAAGACAGACATGATACAGAGATGTACCTCAGGGGTCTCCATCCCATAAATACCTTCCTGGTAGAGGGACATCAGCTTTCCCCCACTCcccagtcaaaaaaaaaaaaaaaaaaaatattggattgTGTTTTTCCAGAAGCCACGTCACCTTCTAACACATGAAGTAATCAGAAGACTAGGctttggggattttttttttctttttttttatataaataacccCTCCACCAAATTGTATTAATTGGACTAAACAAAATGGTCTGAATTTATTTTTGGAACCCTGTTTTGGTACATGTATctaataatgttatttatttatcccaGCCTTGCTTAAGCTGGTTTGCCCTGGTTTTCATTAGCTTGAGATCTGCTCTGATCTGTAGCTTCTTGCGTTAGAGATGGTTGTACAGAATCCTGATGTAGGTCGTCCGAGTGATGTAGCAGACAGGAGAAGTGTGTGAACTATACTTTGTGACTTTTGCTGTTTCTTACTTTAAAAAGAAACGATATCAGATGTTAATTAAACTGTGGAATAAAATGGGATGTTCTCACTGATAATACACAAACACCATCA

Function


GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU260841 lncRNA downstream 33285 22961247 ~ 22962809 (-) True G192232
TU260842 lncRNA downstream 33285 22961427 ~ 22962809 (-) False G192232
TU260847 lncRNA downstream 44768 22951007 ~ 22951326 (-) True G192237
TU260845 lncRNA downstream 56940 22938921 ~ 22939154 (-) True G192235
TU260751 lncRNA downstream 207139 22786334 ~ 22788955 (-) False LOC103041653
TU260851 lncRNA upstream 2051 23030652 ~ 23031070 (-) True G192240
XR_002651658.1 lncRNA upstream 70237 23098838 ~ 23100988 (-) True LOC111195460
TU260909 lncRNA upstream 76507 23105108 ~ 23105627 (-) True G192288
TU260914 lncRNA upstream 125981 23154582 ~ 23155042 (-) True G192293
TU260961 lncRNA upstream 186989 23215590 ~ 23223369 (-) True G192335
XM_007248415.3 mRNA downstream 2444 22974204 ~ 22993650 (-) True ipo9
XM_007248414.3 mRNA downstream 23689 22963708 ~ 22972405 (-) True shisa4
XM_007248413.3 mRNA downstream 37048 22951724 ~ 22959046 (-) True lmod1
XM_007248412.3 mRNA downstream 51085 22940330 ~ 22945009 (-) False timm17a
XM_022682656.1 mRNA downstream 51377 22940330 ~ 22944717 (-) True timm17a
XM_007248416.3 mRNA upstream 4874 23033475 ~ 23036792 (-) True rabif
XM_022682660.1 mRNA upstream 34566 23063167 ~ 23072202 (-) True LOC103044418
XM_022682659.1 mRNA upstream 34566 23063167 ~ 23072197 (-) False LOC103044418
XM_022682658.1 mRNA upstream 34566 23063167 ~ 23072196 (-) False LOC103044418
XM_007248421.3 mRNA upstream 45518 23074119 ~ 23082128 (-) True LOC103045443
TU260753 other downstream 207139 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 273189 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 633637 22349347 ~ 22362457 (-) True alas1
TU260340 other downstream 1144452 21846969 ~ 21851642 (-) False G191862
TU260862 other upstream 26032 23054633 ~ 23058805 (-) True G192251
TU261664 other upstream 2183074 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2846309 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2846309 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 4003062 27031663 ~ 27033089 (-) True G193097

Expression Profile


XM_022682657.1 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_022682657.1 Expression in each Bioproject

Bar chart with 7 bars.
XM_022682657.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.