Item | Value |
---|---|
RNA id | XM_022682657.1 |
length | 5576 |
RNA type | mRNA |
GC content | 0.54 |
exon number | 28 |
gene id | LOC103025998 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_035918.1 |
NCBI id | CM008321.1 |
chromosome length | 32506130 |
location | 22996094 ~ 23028601 (-) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
species | mexican tetra (Astyanax mexicanus) |
id | name | namespace |
---|---|---|
GO:0055114 | oxidation-reduction process | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
K11446 | KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU260841 | lncRNA | downstream | 33285 | 22961247 ~ 22962809 (-) | True | G192232 |
TU260842 | lncRNA | downstream | 33285 | 22961427 ~ 22962809 (-) | False | G192232 |
TU260847 | lncRNA | downstream | 44768 | 22951007 ~ 22951326 (-) | True | G192237 |
TU260845 | lncRNA | downstream | 56940 | 22938921 ~ 22939154 (-) | True | G192235 |
TU260751 | lncRNA | downstream | 207139 | 22786334 ~ 22788955 (-) | False | LOC103041653 |
TU260851 | lncRNA | upstream | 2051 | 23030652 ~ 23031070 (-) | True | G192240 |
XR_002651658.1 | lncRNA | upstream | 70237 | 23098838 ~ 23100988 (-) | True | LOC111195460 |
TU260909 | lncRNA | upstream | 76507 | 23105108 ~ 23105627 (-) | True | G192288 |
TU260914 | lncRNA | upstream | 125981 | 23154582 ~ 23155042 (-) | True | G192293 |
TU260961 | lncRNA | upstream | 186989 | 23215590 ~ 23223369 (-) | True | G192335 |
XM_007248415.3 | mRNA | downstream | 2444 | 22974204 ~ 22993650 (-) | True | ipo9 |
XM_007248414.3 | mRNA | downstream | 23689 | 22963708 ~ 22972405 (-) | True | shisa4 |
XM_007248413.3 | mRNA | downstream | 37048 | 22951724 ~ 22959046 (-) | True | lmod1 |
XM_007248412.3 | mRNA | downstream | 51085 | 22940330 ~ 22945009 (-) | False | timm17a |
XM_022682656.1 | mRNA | downstream | 51377 | 22940330 ~ 22944717 (-) | True | timm17a |
XM_007248416.3 | mRNA | upstream | 4874 | 23033475 ~ 23036792 (-) | True | rabif |
XM_022682660.1 | mRNA | upstream | 34566 | 23063167 ~ 23072202 (-) | True | LOC103044418 |
XM_022682659.1 | mRNA | upstream | 34566 | 23063167 ~ 23072197 (-) | False | LOC103044418 |
XM_022682658.1 | mRNA | upstream | 34566 | 23063167 ~ 23072196 (-) | False | LOC103044418 |
XM_007248421.3 | mRNA | upstream | 45518 | 23074119 ~ 23082128 (-) | True | LOC103045443 |
TU260753 | other | downstream | 207139 | 22786334 ~ 22788955 (-) | False | LOC103041653 |
XR_002651631.1 | other | downstream | 273189 | 22711022 ~ 22722905 (-) | False | amhr2 |
XR_002651628.1 | other | downstream | 633637 | 22349347 ~ 22362457 (-) | True | alas1 |
TU260340 | other | downstream | 1144452 | 21846969 ~ 21851642 (-) | False | G191862 |
TU260862 | other | upstream | 26032 | 23054633 ~ 23058805 (-) | True | G192251 |
TU261664 | other | upstream | 2183074 | 25211675 ~ 25217550 (-) | True | G192815 |
TU261852 | other | upstream | 2846309 | 25874910 ~ 25878653 (-) | False | LOC111195415 |
TU261855 | other | upstream | 2846309 | 25874910 ~ 25878653 (-) | True | LOC111195415 |
TU262021 | other | upstream | 4003062 | 27031663 ~ 27033089 (-) | True | G193097 |