RNA id: XM_022682658.1


Basic Information

Item Value
RNA id XM_022682658.1
length 1078
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC103044418
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23063167 ~ 23072202 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTCTAAAATGTGGGCTTtattatatatgaataaataccGATATAATAAATATCGGTATCGGACTCCTGCTTAAATATTGGTGCAGCCCTGTTGTCAGAAGTACTCTTGGGAAAATTTCACGATGTTCCAGTTTTTCTCCTGGACCGGATCCACATCATCCATTTGCAGAGCCGGGTCGGAGCGCCAGCAGATGGAGCTGCGCTGTGGGTTGTTTACAGTTAACGGGAGCTGAGCGCTGTAGTCTACCGTCAGCAGGAGCTTCAATAGCGGCTTTCCGCGGCGCTCCGCTCGGCTCTTTATTCTCAGAAATACCGGGACTAGACATTCATCACATCGCGAGGTTGGGCGCTGGCAGGGATCCAAAGTGTAAGGTTTCAGTGAGAGACAACAGTTCTGAACGAGTCGCAGGGCAGTCTACTTATGTCAGGCCGAAACGGGTCTGCCAGCGATGCAGACTGCCGAGTCTCAGACAAGTGCCACGTCCCGGCTGACATGGAGCTGATGGAGCTGGGACCCCTGCTGGAGGAGCCGGGGGCATCTGCGGCGAACACACAGCAGGGAGCCAGTAGTGACGCAGTtgaggaagatgatgatgatgaagtggGCGAGGTTCTTACTCTTCCACTGCAGGCCCATCATGCCATGGAGAAGATGGAAGAGTTTGTCCACAAGGTTTGGGAGGGCCGCTGGAGGGTCATTCCCTTTCACGTTTTACCGGAGTGGCTTAAGGACAATGACTACCTCCTGCATGGACACCGACCGCCCATGCCCTCGTTCCGTGCCTGCTTTGGGAGCATCTTCAGAATCCACACAGAGACGGGAAATATCTGGACCCATTTGCTGGGACTGATCCTGTTCCTGTTCCTGGGAACCCTCACCATGCTAAGACCGAACATGTACTTCATGGCACCGCTGCAGGAGAAGGTGGTTTTCGGGATGTTCTTCCTGGGCGCTGTGCTCTGCCTCAGCTTCTCCTGGCTGTTCCACACTGTCTACTGCCACTCCGAGAAAGTGTCTCGCACCTTCTCCAAGTACGCTCGCCACCTCATAATCCAGAACTAGATCTAGATGTTGTAC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260851 lncRNA downstream 32097 23030652 ~ 23031070 (-) True G192240
TU260841 lncRNA downstream 100358 22961247 ~ 22962809 (-) True G192232
TU260842 lncRNA downstream 100358 22961427 ~ 22962809 (-) False G192232
TU260847 lncRNA downstream 111841 22951007 ~ 22951326 (-) True G192237
TU260845 lncRNA downstream 124013 22938921 ~ 22939154 (-) True G192235
XR_002651658.1 lncRNA upstream 26642 23098838 ~ 23100988 (-) True LOC111195460
TU260909 lncRNA upstream 32912 23105108 ~ 23105627 (-) True G192288
TU260914 lncRNA upstream 82386 23154582 ~ 23155042 (-) True G192293
TU260961 lncRNA upstream 143394 23215590 ~ 23223369 (-) True G192335
TU260962 lncRNA upstream 143980 23216176 ~ 23224603 (-) True G192336
XM_007248416.3 mRNA downstream 26375 23033475 ~ 23036792 (-) True rabif
XM_022682657.1 mRNA downstream 34566 22996094 ~ 23028601 (-) True LOC103025998
XM_007248415.3 mRNA downstream 69517 22974204 ~ 22993650 (-) True ipo9
XM_007248414.3 mRNA downstream 90762 22963708 ~ 22972405 (-) True shisa4
XM_007248413.3 mRNA downstream 104121 22951724 ~ 22959046 (-) True lmod1
XM_007248421.3 mRNA upstream 1923 23074119 ~ 23082128 (-) True LOC103045443
XM_007248420.3 mRNA upstream 15330 23087526 ~ 23098564 (-) True rnpep
XM_015605622.2 mRNA upstream 15330 23087526 ~ 23098560 (-) False rnpep
XM_022682663.1 mRNA upstream 32058 23104254 ~ 23144408 (-) False c22h1orf106
XM_022682664.1 mRNA upstream 32058 23104254 ~ 23129686 (-) True c22h1orf106
TU260862 other downstream 4362 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 274212 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 340262 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 700710 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 1211525 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 2139479 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2802714 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2802714 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 3959467 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 4352846 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile