RNA id: XM_022682664.1


Basic Information

Item Value
RNA id XM_022682664.1
length 2474
RNA type mRNA
GC content 0.53
exon number 10
gene id c22h1orf106
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23104254 ~ 23144408 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagggttagtgtgttagagcgagtgagagaaagaagagagagagagagttgtagtgtgtgagagtgagcgTGAGAGCTGTTCTTAGTCGATCTGTGGCTGTGATTTCAGCGAACTTTTATCTTTCCTTCATCTTCAAATCTCTTTATACTTTTACCATGGGGCCTTCACTGGAAGTGAAGACATAGTGTTTTGGGTTGAGGAGCACCAGCAGAGCAGAAGAGATGGAGGCCAAGGAGGAGATCAGTGACACGGACAGTGGGATCATACTGCATTCAGGACCGGACAGTCCGACCACAGTGATGAAGGACGTgagcacacacactcgcgctgTGAAGTTAAAGCGGCAGTCTCTGGAGGACAGACTGGAACTGTGTTTACTGGAACTGAAAAAACTCTGTATCAGAGAGGCTGAACTCACGGGACACTTGTCATCAGACTACCCTCTGCTGCCAGGAGAGAAACCCCCGCAGATCAGGCGCCGCATCGGAGCGGCTTTTAAGCTGGATGAGCAGAGCATCCTGCACCGTGGAGGAGAGGACTCGGAGCTGCGCTCTGTGGAGGCTAAGCTGGcactgcagcagcagatccacGTCGCTGCGCGCAAACTGTACCAGGAGGAGCATCTCAGTAAGGCGGTGAGGAAGAGCAGACTGCAGCAGAGCAAGCGTGAGGAACAGAAGCTCAAAGAGCTGCAGGAGGCAGTGTTCCAGCTCCGCCTCGACCACGGGCGCTCCTCTCCGCGCCCGGGCTTGATCTTGCAGAAACTTCAGGGCACATCAGACGACAGCTCATTATCAGACTCTGCTGTGTTGGACGAAGAGGAGCTAACGAGCCAGTCGTCCCAGGTGTCATCAGAGCCCCCTCCTACAGTAGACTCACTTCCTGTCCCCCCAGGCACTTCCCATCGTCCTCTCACACCCACCGGCACCTCGCAACTACTGCAGCTACCTGTGCCCAGCCCCCGCCCGCTACTCACATTGCCCCTCAAGCCTTTGCACCCCTGCCCCTCCCCCACCATGGAGCATGACCCTGCCCCCATCCAGAACTCCCCTTGGACAGAATCCAGCCTGGATCAGCCTTACCAGAAGAAGAAGTCTCGGTCCAGCAGCACCAAATCTAGTCCTGCTGTTACTCCAACACTGCCTCCACTGAAAGCATGTTTAGAGGAGGCAGGCATCACGCTGCAGGTACCCGGGCATGCCTCACTGAGACACATACAGTCCAGCAGTGCCCCGTCTACTCCAGAGCTCCATCTGCGGAGAGGCTATTCTCTCAGAGTTCCCAACTCTGAGCCACCGAATGACGTGGAGCTGGACAGGGGTCGTTCGAGGGCACCCAGGAGGCGACTCACCGACGTTTTACCCTCACCGTCACCAGAATACTCCCCCATACGCTTAGCCACTCCAAACCCCATGTACCACGACAGCTCAGAGGACAGTAACTCTGAGCACTCGTCAGCTCCTTCGTACATGAGCTCAACCTGCCAGGACCATTCCTTTGAGCTCCAGCGCCAAGCGTGCCAATCCCACCAATCCCATTACAGATACCATTACCCCAGCCCTACTGATCATTACATTCCACAGCCCTACAGCCCCCTCAGCCACTACAAAACCCCTCCTCCCCAACTGTCCCCCAACTACTACAGGGGGTACATGGACGAGGGGCGGAGCCACGACATGGACATGAGTAGGATGTACGTCAGGCCCCAGCCCCCACCTTCCTGCGCCAATGGACACTACGAGTACTGGTACGAGGAGGCGCCACCACACCCGCTCTACAGGCAAATCCCTGCTCACGTCAAGCTCTCCAGGGCTCCATCACTTAGGGAGTACCCCCACCACCCCAGCAGGGGGCTCCCTCGCCAAGTAGTTTCAGAAGAGCTGAAGTCGTGGCACCAACGAAGCCAGTTACGGCCGCCCCGACCACGCTCCTTGGACAGGCATCGGCAGGGCGCGGTGCGGGTCAGAACCCTGCCTGGACAGGAGTCGCCACTACCTCGTCAACATGGCTTCCATGACCCACAGGTACCCCAAAGACGGATCATCCAGAGGACGGCTGACGGCACACCGATCAAATGGTACGAAGACGACGACGCAGAGATCGTTAGTCAAGTGTAGCTGAACAAACATCGCTGCAGAAATACggatatttatgatttatttattgaacCACCAGCTGAACATGATGTTGTGAGGATTATCTGTGTAGTTGGTCTAATCTTGATCTTTtgatatcgtttttttttttttttttttttttacgaacaATGAACTTTTTTTGGTACTGTTTTATACTGAACCTCTGCTGTGAAAGACAATGCTGTTAATAGAATAGATTTTACTATCTCGACTTTTTTgtacaacaaaagaaaaatatataatttcttaCTAAAATGAGCTTCTATGTGTCATCTTACAATCTGTGTTgctaataaagcaaataaaatcaataaaataaaaacatagagAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651658.1 lncRNA downstream 3266 23098838 ~ 23100988 (-) True LOC111195460
TU260851 lncRNA downstream 73184 23030652 ~ 23031070 (-) True G192240
TU260841 lncRNA downstream 141445 22961247 ~ 22962809 (-) True G192232
TU260842 lncRNA downstream 141445 22961427 ~ 22962809 (-) False G192232
TU260847 lncRNA downstream 152928 22951007 ~ 22951326 (-) True G192237
TU260914 lncRNA upstream 24896 23154582 ~ 23155042 (-) True G192293
TU260961 lncRNA upstream 85904 23215590 ~ 23223369 (-) True G192335
TU260962 lncRNA upstream 86490 23216176 ~ 23224603 (-) True G192336
TU260993 lncRNA upstream 199388 23329074 ~ 23329313 (-) True G192365
TU261101 lncRNA upstream 414849 23544535 ~ 23559176 (-) False G192428
XM_007248420.3 mRNA downstream 5690 23087526 ~ 23098564 (-) True rnpep
XM_015605622.2 mRNA downstream 5694 23087526 ~ 23098560 (-) False rnpep
XM_007248421.3 mRNA downstream 22126 23074119 ~ 23082128 (-) True LOC103045443
XM_022682660.1 mRNA downstream 32052 23063167 ~ 23072202 (-) True LOC103044418
XM_007234744.3 mRNA upstream 29982 23159668 ~ 23162419 (-) True LOC103045076
XM_015601696.2 mRNA upstream 79199 23208885 ~ 23282019 (-) True LOC103047010
XM_022682676.1 mRNA upstream 479567 23609253 ~ 23622118 (-) False nfs1
XM_007234740.3 mRNA upstream 479567 23609253 ~ 23622118 (-) True nfs1
XM_007234736.3 mRNA upstream 495224 23624910 ~ 23635826 (-) False LOC103042624
TU260862 other downstream 45449 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 315299 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 381349 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 741797 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 1252612 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 2081989 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2745224 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2745224 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 3901977 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 4295356 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile