RNA id: XM_022682678.1


Basic Information

Item Value
RNA id XM_022682678.1
length 2100
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103041805
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23648266 ~ 23660292 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agttaccATCCTCAGAaatcgcaagttaacagcttcccAGATATGCACACGGCCGTAAAATGACGCTGAACACGGAGAGAGAGGGTAAGGAAGCGCTGCGGAGACGAGCGAGCACTCCAATACCCTCGTCTCACCAGCCTGGGCCGAGAGGGAGAACGCTGCCTGCTGAGTCCCGCCACCCTCCACTCGTCCAGTCTGCCTCCTATCAACCTGGGGACAAGAACGTCCACCTGCAGGCCAACTGGTCCTCAGACTCTGAGGAGTCGGACAGCTCTGGAGCTGAGTGTCTCTACCGGGTAGTCCTGTTAGGAGACCACGGCGTGGGCAAGTCCAGCCTCGCCAGCATATTCGCTGGAATACAGGAAAAGGATGCACACCATCACATAGGAGAAGACACATACGAGAGAACGCTGACGGTGGACGGAGAAGAGACCACCCTCGTTGTAATGGATACATGGGAAACAGAGAAGCAGGAGGAGGATGAGAAGTGGGTTCAGGATTACTGCATGCAGGTGGGCAACGCTTATGTCATTGTTTACTCCATCACTGACCGCAGCAGCTTTGAGAGCGCGTCAGAGCTGCGCATCCAGCTGCGTCGCATCCGCCAGGCTGAGAACATTCCTATCATCCTAGTGGGCAACAAGAGTGACCTGGTGCGCTGTAGAGAGGTGGCTGTGGAAGAGGGCCGAGCCTGCGCCGTAGTTTTCGACTGCAAGTTCATTGAGACGTCGGCCTCACTGCACCACAATGTTCACGAACTGTTTGAGGGCATCGTGAGGCAGATACGCCTGCGGCGGGACAGTAAAGAGACCAACGAGCGTCGCCGCTCCTTCTACAAGCGCAAGGAGAGCATCACCAAGAAGGCCCGCCGCTTCCTTGACAGGCTGGTGGCCAAGAACAACAAGAAGATGGCCCTCAAAGTACGCTCTAAATCCTGCCATGACCTCACCGTGCTGTGAGCTCACTGCTCCGGACctcaccattttttttctccttcttgtTCTGTTCATTCCTGAAAGGTTCAGCTTTTATCTCCAACAAACACTTGGGTTCTggatttgtgtgttttgtgttatttgttatttatttgaacAATCTGAGTGGAGGATTGGACTATGCACCGCTTTCTTTTCACTTTGAGAACTTTTTGAGAATCCTGTTGAGAAAGGTTGGTTAGCTGACCGTGAATCTGAATTTGGATAATCTGGGTATTTCTTAAACCAAagatttgttactttttatatCACTAATGAAGTgggatgtgtgttttttttttatgttgttggaCTTTTATCAGCATTTGCCTTATCATACTGGGGCGACACCTAGGTGAGGTGATCTAACTCGAGtagttgcttgtttttatttctttcatttgaaAAGATAGGCTAAAAATAAACTTGCTGTTTGGCCATGCATTTGCGTGAACATCTGGCTGCATCATGAACATAACTGTTCACGTACTTGCCTATTCGTTGCAGTACTGTGTTACTGGAGGCTTCCAGTGAAGGCCTCCACTTTCCACTGCAGCAAGAACACATCATACTGATGCAGGCAGCCTACGTTATTTTGACCTTGCTGAGTGCCTGTACTGCGCCATACTGTACGTACTGCACACGTCACAGACATACAAATGCCGGTTACACGAGGCAGCCATTATGCATAAGCCACTGTGTCGATAACAGCAAGAATATCTCTAGCCTGAAGGCCCTTTCACATCATGTACAGCTCTCACAAATGTacactctttctgtttctctgctcttttaattattaggagtatatataatattagtgAGGGAAGTTTGCTTCTCAATCCACGGCCTTTCAACTCCAGCCCActacatatttacctcagctcTGCAGTTTTATATTCAGACTGATGATTAGAGTATAAGCCTCTGTGTTCTAATCTAAACAAGATCAGTTGTTCTGCCATATTACAGCAGAGATTTACACAGacagtaaagtaaattaaaacaattaagcaATGTTTCAATCTGTCAGTTTAGGACAAACCTTTAATtcactactcaactaagtaaagaaaaaatactttaaggaataaaaatcagtcaatcagaaaaaatgtaagaactc

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261126 lncRNA downstream 41235 23602319 ~ 23607031 (-) True G192439
TU261101 lncRNA downstream 89090 23544535 ~ 23559176 (-) False G192428
TU261089 lncRNA downstream 99830 23545179 ~ 23548436 (-) True G192428
TU261099 lncRNA downstream 99830 23545179 ~ 23548436 (-) False G192428
TU260993 lncRNA downstream 318953 23329074 ~ 23329313 (-) True G192365
TU261196 lncRNA upstream 218455 23876635 ~ 23884538 (-) True G192484
TU261312 lncRNA upstream 334016 23992196 ~ 24034791 (-) False G192574
TU261313 lncRNA upstream 334016 23992196 ~ 24034791 (-) True G192574
TU261314 lncRNA upstream 334016 23992196 ~ 24049734 (-) False G192574
TU261318 lncRNA upstream 397114 24055294 ~ 24055585 (-) True G192578
XM_007234736.3 mRNA downstream 12440 23624910 ~ 23635826 (-) False LOC103042624
XM_022682679.1 mRNA upstream 14928 23673108 ~ 23680391 (-) False LOC103042306
XM_007234734.2 mRNA upstream 14928 23673108 ~ 23680391 (-) True LOC103042306
XM_022682680.1 mRNA upstream 24029 23682209 ~ 23696247 (-) True LOC103041505
XM_007234731.3 mRNA upstream 24029 23682209 ~ 23691858 (-) False LOC103041505
XM_022682868.1 mRNA upstream 140578 23798758 ~ 23801417 (-) False LOC111195461
TU260862 other downstream 589461 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 859311 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 925361 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 1285809 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 1796624 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 1553495 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2216730 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2216730 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 3373483 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 3766862 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile