RNA id: XM_022682697.1


Basic Information

Item Value
RNA id XM_022682697.1
length 4135
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC103039085
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25508488 ~ 25554687 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attttaaggaaaactgtgctaaactaaattttagtttcatcattCCACAGTACCTTGTTCCAAActgaagctggcttgtccaaatTTGTTCATAccaacatccatccatccgtcccaTTTCCAGTTGAAGCATGTTTGGTAGGATATTCTCCTGCCTCTCTCCGGTTCAGCAGATGGCACCAGTTTCAGCAGTACCGCACTCATCCCTCACAGCGCCCCTGCAGCAGAAGAAGCAGCATCAGCGGGTTCTGGAGCTCGGAGCGGTTATTGTTGTAGGATTAGCGGATTTTCTCAGCGCTCCTCTCCGATATATGTCGAGTTTCCTCCACATTTCGACGGCTCACTCGACACGGCCATGGCCAGCATGCAGTCGTTAAGTGTGTTCGTGACGGAGCGGCTGACGCTGGCGGCGCAGGAGATCTTTAAAGCAGTGGAGGTGACCGTCTCCGAGTACCACCAGGAGATCTCTCGCTCCAGGCAGGAGAACGAGCTGCTGAAGCGGCGGCTGCTGGAGGCTGGCATCGACCTGTACACGGAACTACAGCCCAATATGCCCAGCATGCCCATCATGCACGATGGTGACGGTGATGCCGGGCAGGGGCCGCCAGCCTGTGGAGAGCAGTGGGGGCAGACCAGTGAGGAGATCCAGGTCAAGCTGGAGCTCAGCGCCGCACAGGAACAGCTTCAAGATGCTCCGTCCCAAATAGCCGTGGCTAACGAACCTGTATCCCCGAAGCCGTGCCTCCAGAGCGAACAGAAAATGGAAGACATGTTCCAGTCCCAGACGGCAGAAACCAGTATGGATAATCTACTCCTCGCTGGTCCCTACATTCAGGTCAAACAAGAACCCAACGAGCTTGTGTCGAATTTGGGTCCACAGACTCTGTGTGATGTTCAGAGCTGCATCCCTTCTTATCCCaacaatgctgctgctgcatctggTCATACTAGTGGACTTGGGGGTGAAATGGACAGCCAACGAATGTCGTCATTGCACAAGCCCGGACGATCTAAGTGGTGGGAGATTACACTTCCCTCTCAAACGGCAGCCATTACGGAGACCACCTTAACTCTGATTAAGACCACCCTTCCGCCGTTATCCGAGGAGCTTCTGCAGTTGTTAATGCAGCGGCTGGACGCTCTTGGAGTCTGTAGCGTTGAGGACCTCCGTCGGGTAACAGCTGCCGATTTGGAAGGACTTCTGCAGCCAGCGCAATGTGGAACACTGATCGAGGTCTTTAATACAGCATCATCTGAAAATGAACTAGCACATTCAACAGCAGGACCGATTGAACCACCAGCTGGCGCATCTGGGAAATTCCAAATTCCATGGGAAAAATTTCCACCAGAACTCGTAAAAGCCATGGTAGAGAAGACACGGCCACATCCATCACTTAGACGTGAAATGGTTCGTATTATCATTGACGATTTCTTCTCTGCAAAAATGAAAAGACCGGGACGGGACACTATCCGGCAGATCTCCCATGAGCTCGTTCTGAAATACCCCAATTCTTTCTGTGATCTGTACGGGGAAGACGCGTTTGGCACGGGGTTCAAATCTCTGATGGATCAGATGGAGAACAGAGTGGAGAACTGCTGGCGAAGTGGAAAACGAAAATCCAAGAGACCGGCTGAAAGTGACGCTGGAGCAGAGAAACCCAAACGATTCGTTCATTATGGCTGCGTGCAGTGGGAACCTGACCTTCCAGCCAATGAGGATGGACAAAGCCAGACTGGCaaaagggcggagctacagaatTCTTACACAGTGAAAAATCTTCCGGAGGCAGACATCAAAAAGCTAATGGCTGAAACATACTACAGTCAGCGCATCTCAATTAACCACAACAATAAGACCATTAGCGAGTTAAAGGAAAAATGGCCGTACTTGTTTGAAGCAACGTATTTGTTTGAACATTCTGAGCGACTGCTTGGGATACCTGTTCAGAAACGGCTTGCGGAGGAGCTggcaaaaaagggaaaaacaatAATGAACTTTTTGGCGCAAGCAAAGGTGACACCAGGCAATTTCCAAGGCCCTTTGGAGCTGCTCTTCAGCATTGGAAATTACCTTGGTGACAAAACAGAACTTCTACTGATCAGAATAGAGGGCCACAACTTCACTGCGCAAAGTTTGCAGAGAACACCATGTGTCCTTGTTCTAGATGATGAGCATTATCTTATGGCAGTAGATCAGACAATAGTGAATGGCCACATAAGCTGCCCACTGACCGCCTTAACCTACCTGATCTGCCTCTTCTACACACTCAACATTCAGTTTCCCAAGGACGCAGCTCTGGCACTGGACTATGTTATGAGGTGTCTCCTGGGGATCAGTCCCAAACGAGGACCCAAAATGTCgcggaaagagaaaaaacagctCAAGATCCACCCTAAACTGATGAAGTTCCTCTCTGAACTCAGTGATTATCAGAATCCTACAAAGTTCTAGAAAAGCTTCTCTCTGACATCCTCATCATTCAGCTCTCAACTAGTCTTCGAACATGACCATCAACCAAGCAGCTCTGATTTGTACCATGAGTCTGGCTACTGAAGATCATAAGTGGACTGTTCTGTATGTCTGGGAGTAGACATGCTGTCTATTAGACGGCCATCTTGTTTTTCTGTCCTGCTGTTGGTAGTCTACAGAATAAGACTCAAACAGCAGGACTTCATGGGAGATGGGAGCTGTTAATAGGACTGGACAatatatggccaaaatttatattacAACACACTTCTTATTTTAGGTCAATAAGATACTGTTCTGATATTGGTATGTATGATGTGCACCACATAGGTGGCCCTGTGCCCTATAATGAACATTagtgacagattctgtaaaatTACTAAttggaaatgtgtttaaaaatcactgttattaaaaggttttcgatttttacttttttccatcatacagtatattgatattgatccAGCCCTATGGGCTAATCAGTGGGATAACACAAGCTGATTTACATTTGTTGAATCAAGGCTAAAAATGGGCgtttacttctttttaattttttttttctccaaatacTCAGGCAGCATTCGAGGGTCATGCTTATTTAAGTATTTGGATACTGAAGTTTTTGTAAATGTTggaacatatacacatataaagaatgtataatgtgtatatataatgtatatgtaCATGACGAGACATATGTATGTGTCTAATGAGTCCTGAACACGATTTATGTTTAATagttctgcaatatttttgtatgtgtatatatatatatatgtaagttgatccacaaaaataatagaaattactAAAATAGAACTTTTTATTCCCTTTTTGTTTATCCTGTATGTTTAAAGTTCAcccacaaaataataattacaccaACAAACCTGACCATGCTTGACTAATTCATGTATAAGTATTAGGGGTGGGACGAAATAtcgatattgcgatatattgtattgtttccaTATGCAAAATATTATCAATTTGCgccatcaaatattgatattattacTGAAACATAGATGTTCTGAACTCTCTAAGACTCGTCCCTTAATTTGCATTCTTAAAGTTACTGCATCGTTTCTCCACATGGTGGGGCTTTAATCAAATGTATAGTGTAAACCTTGGTGagggtgaagaatattggttgtcaagTTCTGTGAAACTtccaccaataaatccataattcttgGTACTTGTTTATTTAGTAGTATTTTATCCTTTTCTGTAACACAGATACTGTAAAGTACTGTAAGGAATTGTTGTGATATATCGAGAATTACAGTATCATGAGATCATTGTTATCGTGGACAAAATATCGCGATACTATCGTACCCTGTGACACACACCcctaatatgtatatatttagttaCATACATGTTAGAGGTCTGTTTCTAAGTAAGTAAAATTTGTTTGTCGTTTTTATGGGCattgttttttccctttattattttaaatcacttaaataatttgttttgaaatgattactgttttatttagatttctTTAGTTCTGTAAGGTTTTACTGACTTTAATGTGAACTGTGTAGAACTTTAATCTTCACTTTTTTATGCCCGCATTTTGTCTGCAGTAAACGAATCTATATTTTGTACTCTGAtgcttttcttctttattaaaaaaaattaagcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261751 lncRNA downstream 16651 25502503 ~ 25503530 (-) True G192887
TU261728 lncRNA downstream 61553 25458413 ~ 25458628 (-) True G192871
TU261726 lncRNA downstream 68527 25451268 ~ 25451654 (-) True G192869
TU261672 lncRNA downstream 157445 25362531 ~ 25362736 (-) True G192822
TU261671 lncRNA downstream 256187 25263039 ~ 25263994 (-) True G192821
TU261757 lncRNA upstream 24176 25578863 ~ 25580309 (-) True G192892
TU261818 lncRNA upstream 220710 25775397 ~ 25779194 (-) True G192944
TU261823 lncRNA upstream 227695 25782382 ~ 25785455 (-) True G192947
TU261827 lncRNA upstream 254381 25809068 ~ 25818951 (-) True G192951
TU261830 lncRNA upstream 264521 25819208 ~ 25825956 (-) True G192952
XM_007247766.3 mRNA downstream 165704 25235114 ~ 25354477 (-) False lrrn2
XM_022682696.1 mRNA downstream 185274 25235114 ~ 25334907 (-) True lrrn2
XM_022682690.1 mRNA downstream 719280 24774039 ~ 24800901 (-) True LOC103045744
XM_022682685.1 mRNA downstream 1236482 24147827 ~ 24283699 (-) True nfasc
XM_022682684.1 mRNA downstream 1414283 24039246 ~ 24105898 (-) True cntn2
XM_022682713.1 mRNA upstream 33039 25587726 ~ 25770719 (-) False ppfia4
XM_022682712.1 mRNA upstream 33039 25587726 ~ 25770719 (-) False ppfia4
XM_022682710.1 mRNA upstream 33039 25587726 ~ 25770719 (-) False ppfia4
XM_022682707.1 mRNA upstream 33039 25587726 ~ 25770719 (-) False ppfia4
XM_022682704.1 mRNA upstream 33039 25587726 ~ 25770719 (-) False ppfia4
TU261664 other downstream 302631 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 2461376 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 2731226 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 2797276 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 3157724 22349347 ~ 22362457 (-) True alas1
TU261852 other upstream 320223 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 320223 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 1476976 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 1870355 27425042 ~ 27476869 (-) False LOC103046149
TU262456 other upstream 2639692 28194379 ~ 28212718 (-) False LOC111195422

Expression Profile