RNA id: XM_022682744.1


Basic Information

Item Value
RNA id XM_022682744.1
length 3349
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC103044609
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28065882 ~ 28162362 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAAGCTGGGGGAGTGAGCGCAGTGAGCAGAGTGTGTCACAGTGTCAGTGTTTCAGTGGGCTAGAGAAGCTCAGGACCCCCTAAACCACAGCTTTACCGGACTGTCTAACGCAGAGGAGCGTGTGAAATGATTGGTATAGATCTGTGACTGGAGACGGATTAATCAGCCAACATGACGGTGGATTTTGAGGAATGTATCAAAGATTCACCCCGATTCAGgGCGAATATCGACGAGGTGGAGACAGATGTGGTCGATGTTGAGGCCAAACTGGACAAGCTGGTGAAGCTGTGCAGTGGGATGATCGAGGCTGGCCGGGCGTACGCCAGTGCCAATAAACTCTTCATCAATGGCATTCGGGACCtgtctcagcactgcaaggagGAAATGATTTCTGAGTGTCTGGAGAAATGTGGAGAGAGCCTTCAGGAACTCGTCAACTACCACATGATTCTGTTTGATCAGGCCCAAAGATCCATAAAGCAGCAGCTGCACACTTTCGTCAAAGAGGATGTGAGGAAGTTTAAGGAGACGAAGAAGCAGTTTGATAAGGTGCGTGAGGATATGGAGATTGCGCAGGTGAAGAACGCTCAGGCTCCCCGCAACAAACCGCACGAGGTGGAGGAGGCCAGCAGCGCTCTTGTCGTGACCCGGAAGTGCTTCCGACACCTCGCCCTCGATTACGTCTTACAGATCAACGTTTTACAGGCCAAAAAGAAGTTTGAGATCCTCGACTCTATTCTTTCATTCATGCAAGCACAGTACACACTGTTCCAGCAGGGCTAcaccatcctggatgagctggaTCCCTACATGAAGAAACTGGCGGCCGAGCTGGATCAGCTGGTGATTGACTCGGCCATGGAGAAGAGGGTGATGGAGCACCAGCATGCCATCATCCAGCAGCGGACATTGATGcagGACTTTGCCTATGACGACTCGAAGGTGGAGTTTAACGTAGACGCCCCAAATGGAGTGGTGATGGAGGGATATCTCTTCAAGAGGGCCAGTAATGCTTTCAAGACATGGAACAGGCGATGGTTTTCAATACAGAACAGCCAGCTTGTGTATCAGAAGAGATTAAAGGATGCTCTGACAGTAGTGGTAGAGGACTTGAGGCTTTGCTCAGTCAAACCTTGCGAGGATATAGAAAGGAGGTTCTGCTTTGAAGTGGTGTCCCCTACAAAGAGCTGCATGTTGCAGGCTGAGTCAGAGAAGCTGCGTCAGGCCTGGATTCAGGCTGTTCAGGCCAGCATTGCCTCAGCGTACAGAGAGATCACAGACAACTACTACATAGAGcGTTTGGACAGAACAGCATCTCCCTCCACCAGCAGCATAGACTCAGCCAGTGAGCCACGGGAGAGGAGCGTGAGGGGGGAGACGCTGCTGCAGAGGGTTCAGTCTGTACCTGGAAACGAGCTGTGCTGCGACTGCGGGCAGTCCGACCCACGCTGGGCCAGCATCAACTTTGGTATTCTGCTGTGCATCGAGTGCTCTGGCATCCACAGGAGTTTAGGTGTTCACTGCTCAAAGGTGCGCTCTTTAACGCTGGACTCTTGGGAACCTGAACTAATAAAGCTAATGTGTGAGCTTGGAAACACAGTAATAAATCACATCTATGAAGGAGCCTGTGAAGAAAGAGGGCTGAAAAAGCCTGGCCCAAACAGCTCCAGGCAAGAGAAGGAGGCCTGGATCAAAGCAAAGTACGTGGAGAGGAATTTTCTGAAGAAGATGTGTGGTGCTGAGGCACTGGTGGAGGGGGGCAGGAAGTCACATCACTGGCGCgtgaaaaagtgcagaaggaacCACAGCTCAGTCAGCGCACCCAAAGCCCGGCGGAAATACAGGCACGATGGAGGGAGCGTGTCTCCAGGCAACCTATCTGCAGCTGCTGCAGCTGCCAAGTTCCGCAGAGAGTCGCTATTCTGTCCAGATGAACTTGACTCGCTCTTCTCCTACTTTGACACAGGCTCTGGGCCTCGCAGCCCCGCAGGTCTCAGCAGCGACAGTGGCCTGGGCGGCAGTACGGACGGCAGCACAGACATCCTGGTGTTTGGCTCAGTGGTGGACAGCGTCACTGAGGAGGAATGTGAGGACTCTGAGGAGTCCAGTGAGGAGGTGGAAATCGAGCAGGAGGCATCAGATCCAGAGGATTTGCGGGAGCTGCATCCCGGAGCCCTGCTCTACAAGGCCTCACGGGCCCGCAACCTACCCGTCATGGCCGAAGCACTAGCGCACGGAGCAGACGTTAACTTGGTCAGCGATGAGGACGAGAGCAAGAGCCCCTTAATACAGGCTGTGTCAGGGGGTTCTTTGATAGCCTGTGAGTTTCTTCTGCAAAACGGAGCCGATGTCAATCAGAGAGATGCGAGAGGACGGGGTCCTCTTCACCACGCCACATGTCTAGGCCACACTGGGCAAGTGTGTCTGTTCCTGAAGCGAGGGGCCTCTCAGACAGAGGTGGACGAGGACGGACAGGACCCTTTGACCGTCGCTGTGCAGGCAGCGAACGCAGACATTGTTACACTGTTGCGGTTGGCCCGGATGAATGAGGAGATGCGTGAGGCGGACGGACCCCTCGGCCAGCCAGACCCCAGTTTTGTTCAGAGTCCTCGGAGAGTAAAGCAGAAGGACAGAACAGCGACACGCTCACTGACATCGTTTGGGAGTTTCCGGACATGGCTTCAGACCAGCCCAAAAATGAAAGGAGGAGAAGCGGATTAAAGGCCCAGGGCTCCAGCAGGCCTGAGAAGGATACATGCAGCTACATTTACTTGCAGGATGCATGCTGGGTATTGTAGTAAGAGAACACTGATAGAAAAGAATGTGGACTACAGAATGTTATATAACATAAAAAGGGGCTTATTATGtaactatactatatatacacacacactatatgtccaaatggaCTTCAGACACTCCTTTTGATGAATGCATTTAACTTTATGAACCTATTGGCTCGATCCATAATGCCAGAAAGGGTCACTTAAAGGGGTGTAAATCCCTCCCATCGCTTAACTGTGGAGTAGtggaagaactgtgttctctggaatgatggtgcttcatTTTTTCCTTCTGGATGAGCTGGAGTGTTGTTTGTGATCTTGAAAAAAAGTATACAATAAGgatgattttatatatatatatattatatatatatatattatatatatatatatatatatatatatattatatatatatatatcataggAATATACAAACAACATTATAAACATCTGCACATATAGTTAATGTAGTTTATTAATGCTGAAATTATATCAGAAGTAATGGTCATGATTgtaatataaagctctggaaaaaaataaattaaccttaagagacca

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262418 lncRNA downstream 50270 28011063 ~ 28015612 (-) True tmem167b
TU262416 lncRNA downstream 50345 28010991 ~ 28015537 (-) False tmem167b
TU262415 lncRNA downstream 50345 28011063 ~ 28015537 (-) False tmem167b
TU262409 lncRNA downstream 329771 27735902 ~ 27736111 (-) True G193370
TU262408 lncRNA downstream 334220 27731003 ~ 27731662 (-) True G193369
TU262468 lncRNA upstream 3479 28165841 ~ 28166081 (-) True G193411
TU262484 lncRNA upstream 72803 28235165 ~ 28236469 (-) True G193424
TU262486 lncRNA upstream 81446 28243808 ~ 28244702 (-) True G193426
TU262496 lncRNA upstream 154982 28317344 ~ 28318704 (-) True G193435
TU262497 lncRNA upstream 154982 28317344 ~ 28317721 (-) False G193435
XM_007247722.3 mRNA downstream 17187 28030686 ~ 28048695 (-) True LOC103026702
XM_007247727.2 mRNA downstream 37212 28024337 ~ 28028670 (-) True b3galt6
XM_022682743.1 mRNA downstream 50316 28011060 ~ 28015566 (-) False tmem167b
XM_007247729.3 mRNA downstream 57273 27962367 ~ 28008609 (-) True LOC103028137
XM_022682747.1 mRNA upstream 28358 28190720 ~ 28201222 (-) True LOC111195421
XM_022682749.1 mRNA upstream 47770 28210132 ~ 28212738 (-) False LOC111195422
XM_007247721.3 mRNA upstream 55099 28217461 ~ 28224664 (-) True LOC103026411
XM_022682752.1 mRNA upstream 91422 28253784 ~ 28267940 (-) True LOC103044024
XM_007247720.3 mRNA upstream 107595 28269957 ~ 28294968 (-) False LOC103025279
TU262199 other downstream 589013 27425042 ~ 27476869 (-) False LOC103046149
TU262021 other downstream 1032793 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 2187229 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 2187229 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2848332 25211675 ~ 25217550 (-) True G192815
TU262456 other upstream 32017 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 47662 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 47829 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 413745 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 413745 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile