RNA id: XM_022682752.1


Basic Information

Item Value
RNA id XM_022682752.1
length 4797
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC103044024
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28253784 ~ 28267940 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTCTCCTCTGTATCAGAGATTCTTGATTCTCTGGAAACAGCAGGAAAACTAGCGGCTGGATTCGGCACCCCAGTGGGACTCCCCGAGAAGCGGCGCTGCTGGAAACGGGCTGTTTATGATTATGCGAAGAGCTCGATTTAAGGCTGCCTGCCGAAGTTTAAGAAGATGGGAGCCCTCCCTGATCCATTCCTGAGACGGTTGTTCTGGCTGGCTGCTCTCTTGGCGCTGTTGGATTATGCAGCTGCGGCTTCTGAATTTAATCCTTACAGGGTGCTTGGAGTGTCAACACATGCCAGTCAAGCCGAGGTCAAGAAGGCCTACAAGCAGCTTGCCAGGGAATGGCATCCAGACAAGAATAAAGATCCAGGGGCGGAGGATATGTTTATCAAGATTACCAAGTCCTATGAGATCCTGTCAAACGAGGAGAAGAGAGCAAACTACGACCGGTTTGGTCAGACAGATGAGAACCAGCACCATGGCCAGGCACCGCAGGGCTTCCGACACTTCCACGACAACTTTTACTTCGACCAGTCATTCTTTCACTTCACACGCTCGACCCGAGATTTCACAGACAGCAAGCACCTTCTGCACCACGATCATTACATGAAAGAGGTGGTGCCAGACAGCTTCAAAAGACCCTACCTGATAAAGATGACCTCTGAGTGGTGCTTCACCTGCATCCATATAGAACCGATCTGGAAGGAAACAGTTCAGGAGCTGGAGGCATTGGGTGTGGGAATTGGTGTGGTGGACATTGGGTACGAGAAACGGCTTGCCAGCCATCTTGGTGCCCATCGCACCCCCTCTATTCTGGGGCTCATTAATGGGAAAGTGACTTACTTCAATTATGCTATATCCAAGGAGTACTTAAGACAATTTGTGGAAAGCCTTCTGCCACAGAGGCTAGTGGAGAAGGTGACAGATGATACTTacttgcagtttttaaatggttGGCGTGAGGAAAACAAACCTAGAGTGCTACTGTTTGACGCGGTACCTTCAGTGCCTTTACTGTATAAGCTCTCAGCGTTTGCGCATCAGGATTTTGTGAGGTTTGGGTATGTAGATCAGGGCCTGACTGAGACTTTACGCATCCTGCAGCAGTTCAACATCAACACATATGCTCCCACCATGCTGCTGTTTaaggagaacacagagaaacCTGCTGATGTCATACAGTCCAGGGGAATGAAAAAGCAGCTCATTGATGAGTTTGTCTCCAACAACCGTTTTTTGATGGTACCACGACTGGTCAACCAGAAGCTTTTTGATGAGCTGTGTCCAGTCAAACAGTTCCACCGCCGTCGAAAGTACTGTGTGTTGCTCATCACGGGGGAGGATGAGGCTTTCGTCCCGGTGAACGATGCTTTCTTCGCCTTCGCTTCCGCCAACACTAAAGAGGTGCTGAGATTCACCTACGTCTatcagtggcagcagcagccgCTGTGTGATGCTCTTCTGAAAAAGGAGGACATGACCCCTCCTCAGGTAATTATTCTGGAGAGGCGGAGCACCACAGGTAAAGTGTTGTATCGCACAGTAAAGGGCGGCTGGAATGGAAGTGATGAAGATAAGCACCGCCTCCACGAGCAGCTGGAGCTCCTGCAGAGAGATCCTTCGTTCCTCACCTATGACGCCATGCTGCCGGAACTCAACAATGAGTTCGCTTCTATGTTTATAATTCAGTGGGCGAACGCTGCTTATGATTACCTCTCTGAAATGTACTTTGATTTTCTCCACTCAAACTGGCGAGAGATGATGCCAATCGTGTCTCTGATCTTCTCTGCTCTCTTCATTCTGTTCGGCACTGTCATCATTCAGGCTTTCAGTGACTCTGGTGAAGAAAAGCCAGCCAAGCAGAAGGCGAATGAATCACCAAAGACAGCGGAGAGCTCTCCAAATGCTGAAAACACGAGCAGCCGTCCTCCTAAGAAGAACTTTGTGGAGGTGACTGAGCTGACTGATGTGACGTACACCAGCAACTTGGTGAGGTTAAGGCCGGGACACATCAACGTGGTGCTGGTGCTCACTGACACATCCAAACAAGCTCTGCTGAAGAAGTTCGCCAAAGAAGTGTACTCTTTCtcaggGTCCCAGACTCTTCACTACTCCTTCTTAAACGTTGATAAACACAGCCAGTGGATGGACAGTCTCCTGGAGTTAGCGCCCAGCTCCAGGCCTCGGGAcgaggaggaagaagagagcACGCCTTCCAGTAAACGGGACTACACCGGCTACGTGCTGGCACTGAACGGGCATAAGAAATACTTCTGCCTCTTCAGGCCTGTGTTCACCGGGGATGAGCCCGACTGCAGCAGGTCGTCCGACGAGGACGGCGGGGGATCTCGAGCGAGGTCCAGAGGCAGCTCTCGACAACGGTCAGCATCCACCCGGCAGATCCATCACAAACTGGACCATCTCAGTCTGTGGATGGAGAGGCTGATGGAGGGTACCTTGCCTAGGCACTATGTTTCAGACTGGCCTGATCTGAAAACCATCAGCCCTCAAAAATAGCTGGAAAAAGCTGGACGGAAGCGGGACGCGTCAGAATGCTTGCACGTGCATGCCCTGTCCACTCCTGCTCACGAAGCTCCACAGAGAATCACTGGATTCCTCTGCATGGGGCATCTGATGATGTGGGGAACAGCAGCAGGGGTTGATTTCCgtttgtgtgtgaagtgtgaggCTTTGTTAGGAAACTGACTTTTACGGAAagcgtttttattattattattattgttctgGATTATGCACTGTCTGGATCACTAGGGAGTTTTGAATAGGAGTACCGTGTGTGCTTTCATTTTTCTTGTGCTGCTAGCTGGGGCTACACTTGCTGACCATGTCATAATCatgataaaaatacaaaaaactaatGTACAAAAAACGTTTACCGCTGCTTTATGCTGTAGGAGCTTTTCTCTTAGGGTGTGCTCACACTAGGCTTTCTGAACCGTGTCTGAGCATGCTTCCCCCCCCAGTCCTGTTGCAATAAATACAGTGTTGACTTATGGAACAATAAATGGACACAACTATTGTTTTAGCAACAAATACTAGCCAAAATAAGCCATGACTTCAAAAAAATTGCACCTCCTGTGTTAATTTGCTTTTTTCACTTATATAAGACTGAATACTGAAggtttttttatgaaatttgCCTACATGTACCATAGTTTTGTCTTGATCTAAAAACGAAAAATAATAGTTGTTtggaataaattatttaatctttttacATATTTGGCTGAACAACAAATCatttcagttgccaaatattaaatatgtccCTAATTATTAAGAAACCAGAACCAAGAACAGagatattaaaggagaactccggtgtaaaattgtaaaacctAATAAAAAGAGTACTAacatttgttgaatagccctaGTTTCTGAAATCCTGTGAATTTTTACAGTTcgtccaaacatgctttagaatggatgatatggagCATATTTTTCCTctgcagataaattgctttttacaccattatccaggctcaaagtagctccacacctggtagaatccggagagtcctgacatttaaaacgagacatTATTAACTTTTGAAAGTGCACAACTCACAAatttgtcaacattttttgCAATTAAAATTGTGGTAATTGTAGCAGCAGTAGTGCTCAGGTACGATACAAATCAATCAAGCCTAGTGTGGGGATACCCTTAAAGTCAGTTTATGCCCAATGGTAAAATAGagagttaaaatatattaaaggcaTTATATAGAATTTGtctatactaaaatatatataaaaaatctagAAGTGGGTCACTAGTGTCCATGCGGGATTCTGTAAACTCCTAAACAAGCAAGTTTAGAAACACTAAttggaatttctttttttatttatcttttctgaaccctaaaaaaaaaaaacaataaataatttgtatttattcacaCCACACTCAAAACTGAATTAAAGGTGCTTtatcatttgtaacatttatataaatatctcATCACTGTTTTAACTGGCTGGTTAATTTCACTAAATAGTTAGGACatcaaaaattatttatttattattattcttttttataaatagtGTGCACACTGTGTTCAAATGTTTATGGTTGGCCATTCTAATATTCTGGTTCTTACAAaggagtgcaaatgtacacacaAACTCAGCTATTCACCAtatctaatgccaggtgtgtgcgagagggatagagagagagattctcaCAGCTGTGCTCCATAATCTAGTAGAAttcctttcctggacagtagagaattgaacacagtactgtatattacacaGTACTAATTTACAGAACAAACAAAATTCTAATACTACGTATTGCACCTTTAATTCTATTGTTATGAGCGTGGTGTTTGTTTACTTGCATGAAACAAAATATCATAGTTGCCAGATTTTGTTTAGAAGATATAAGCAATTAAATTTTTTGCATGTCACGTCTTTCCTTAAACTCCGCCTACTGTAGCATTAATGCTCcttagctttttttgtttttgtttatgggTATTGCACTTTGACtgctttttgttgtttgtgctCAGGAGGCCTTCACTCAGAGATACTTTAGTACGAGTGTGTTCCACTGATTGTTATTTACATGTAGGCCTGGAATGCTTCTAACAATGTATAAAAAAGTCAGGCATAGGGATTTTAACCTTTGGAGATTAAATATATGTCCTCTTTATTTAAGagaagattttttatttataagatgtttcattgttttatcCATGTGACTCACATAACggttaatttaaataaagtttacacAAAAGCTAAA

Function

GO: NA

KEGG:

id description
K09536 DNAJC16; DnaJ homolog subfamily C member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262486 lncRNA downstream 9082 28243808 ~ 28244702 (-) True G193426
TU262484 lncRNA downstream 17315 28235165 ~ 28236469 (-) True G193424
TU262468 lncRNA downstream 87703 28165841 ~ 28166081 (-) True G193411
TU262439 lncRNA downstream 186103 28067474 ~ 28067681 (-) True G193386
TU262418 lncRNA downstream 238172 28011063 ~ 28015612 (-) True tmem167b
TU262496 lncRNA upstream 49404 28317344 ~ 28318704 (-) True G193435
TU262497 lncRNA upstream 49404 28317344 ~ 28317721 (-) False G193435
TU262559 lncRNA upstream 127757 28395697 ~ 28469608 (-) True G193477
TU262660 lncRNA upstream 327711 28595651 ~ 28596007 (-) True G193540
TU262689 lncRNA upstream 607977 28875917 ~ 28930921 (-) True G193568
XM_007247721.3 mRNA downstream 29120 28217461 ~ 28224664 (-) True LOC103026411
XM_022682749.1 mRNA downstream 41046 28210132 ~ 28212738 (-) False LOC111195422
XM_022682747.1 mRNA downstream 52562 28190720 ~ 28201222 (-) True LOC111195421
XM_022682745.1 mRNA downstream 91422 28065882 ~ 28162362 (-) False LOC103044609
XM_007247720.3 mRNA upstream 2017 28269957 ~ 28294968 (-) False LOC103025279
XM_015605470.2 mRNA upstream 2017 28269957 ~ 28294968 (-) False LOC103025279
XM_022682753.1 mRNA upstream 2017 28269957 ~ 28294755 (-) False LOC103025279
XM_022682754.1 mRNA upstream 2017 28269957 ~ 28291499 (-) True LOC103025279
XM_022682755.1 mRNA upstream 2017 28269957 ~ 28277337 (-) False LOC103025279
TU262455 other downstream 40714 28210191 ~ 28213070 (-) True LOC111195422
TU262456 other downstream 41066 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other downstream 41066 28210024 ~ 28212718 (-) False LOC111195422
TU262199 other downstream 776915 27425042 ~ 27476869 (-) False LOC103046149
TU262021 other downstream 1220695 27031663 ~ 27033089 (-) True G193097
TU262651 other upstream 308167 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 308167 28576107 ~ 28583747 (-) False LOC111195343
TU262661 other upstream 329615 28597555 ~ 28598638 (-) True G193541
TU262902 other upstream 1897821 30165761 ~ 30180126 (-) True G193737
TU263040 other upstream 2541854 30809794 ~ 30830946 (-) True spcs1

Expression Profile