RNA id: XM_022682765.1


Basic Information

Item Value
RNA id XM_022682765.1
length 8531
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC103046446
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28546579 ~ 28570942 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccttctcctctttctccGCGGTGTGTCTGTGGGTCTGGCTGTAGCTGTGTTTGTCCTCTACCAGCGCTGGGAAAGGCGCTCCTCCATCAGCAGCACGCAAAGAAGAAAATGGAGGACAAGATGTGGCGGTGAGCGCGCTGCTGCAGACACGCCGGATTCACAAAATCTCGTAATGTGAAGTGTATGGATATGGGTCTGCTGTAATCATACACTATTCCTGAAAGACACACAAACAGATATTCTGTTTGAAAAGTATTGAGTGTCTCCATCAGCTATGGAGGAGAATGTGGGTCCTGAGCTAGCTCAAGTTCCTGAGCCTGAGGCCAGGCAGGATCCTTTGGATGCCATCTCACAAGCTCCCACAACTGTTCTTGAGGAGGAAAAAGAAGACAAAGACCAAGGCAATGCTGCTCAAGAAGACAGAGTAGAAGATCCAGAGAAATCTAAGACTTCCGGTGAGTTCAAGAAAACCTGGGGCTTCCGTCGGACAACTATCGCCCAACGAGACATGCCTGGAGAGACGGCAGCAGAGAGCCCTGATGCCAAGGGTGCGCCGGTGCGCCGAAGTGGAAGGCAGGCCAAGCGTACCGACAAGCTAGAGGAGTTCCTGGTAACAGTGAAACGAGGCCGAGGCGGAGGTAGGCGGAGTGCTCCTCTTCTGCTGGAAGGTGGCGATCCCCCCTCCCAGACTCCGACAGATGCAGAGACTGCTTCAGAGGCGAGCTTTGATGGAAATGCAGAGGCTAAAGCAGCAGAGAATAAAGCACCTTCTCCTGCAAAGAAAACTAGGGGACGGAAAAAAGCGGCGGCCAAGGCCAAAACAGTCCAAGCTGGGTCACACAGCGATGATGCCAGCTCTGAAAATGAAGAGGAGGCTGGCGAAGAAATTTCAAAAGTGGTGCACGAAGAAGTTGTGGCAATGGTCAGCACAGAAGAAGAAGGCAAGATGGAGGACTCTGTGAATGAGCTGAAACCAGAGCAGGAGGCTGTGAAGCAAGACAAAGATAATATCGAGAAGGAGAACAAAGACAAGCCTGAGGAGGAAGCGGCTAACAGACGACCGACCAGAAGCCCTGCTAGAGCTGCTGGGAAGGAACTTACTCCTGCTAAGAGAGAGGTGAAGCCTAAAGCAGGTGCAAAGTCCCGCAAAGgacaggaagaggaggaggatgatgaagatgaagatgacgAGTCTTCTTCAAGCGAGTCTGATAGCGATGGCTATGACCCCAATGCATTGTATTGCATCTGCAGGCAGAAACACAACAAAAGGTTCATGATTTGCTGTGACCGCTGTGAGGAGTGGTTCCACGGAGATTGCGTGGGTATTACTGAGGCCCGTGGGCGTCTAATGGAGCGTAACGGTGAGGACTACGTCTGTCCCAACTGCACTGGAAAGAAAGTTCAGACCTCTAAGCCTGCTCCATCTACAGCAGCGACTGAAAATGGGAAACGGCTTGTCCCTCCTGTTCGCAAGGCAGAGCCCAGTCCAGCTCCTGTTAGCCAGCCCACAACACCGTCAACTTCAGCTGCTGTCTCTTCTGCTGCTACTATTACACCTTCTACTCCTAGTGCTGCTCCTTCCACAGGCGAGAAACCAGGGGAAGATTTGGGAATTAAGGGGAGGATAGAGAAGGCCACCAACCCAAGCggcaaaaagaaaataaagattttccAACCGCAGGCAATTGTGTCACCGGAGGAGTCCTCTCTGCCTAAGTGCATCGGCCCTGGCTGCGAGAGGGATGCTCTGCCTGACTCGGTCTACTGTGGGAATGACTGCATCCTCAagcatgctgctgctgccatgAAGACCATCACCACGGAAAACAAGGAGCCAAAGACCAAGGAGAAGACAAAGACCAAAACGCAGAAAAAGACACCAGCTAAATCAACACCCAAGAATGCGGTCCCAGAGCGGAGGAGTAGCAGAAGGTCCACAGAGTCCTCCAGCAAAGCTGAAGAGGAATCGTCCGAGTCAGAGGCTCGTGaacatgaagaggaggaggatgaagaagacaAACTTGCTGAGGAACATCCACCACCTCCAGCCATGTCATCCTGGTCCAGTGACCATAATTACATTGCAGTAACGCCAGAAAAGACTACACCCATATCACCAACTGTGTTAAACAAAGCGTctACCCAGAAAGAGAAGGataaggaaaaggaaaaagaggagCAACATGCACCTGAACCCGAGCCAGAAAAAAAGGATCCAGCTCCTGTTGAGAAGAAGCCCCCAGTTACAACACCATCCCCCAAACCAAGCAAGAAATCCCCAGGCTTGAAGTCAGCCAAGTCTGCTCCTCAGGCCGCACCCAAAGGCAACACCTCTGCAAACAGTGCGAAAAAACAGCCACCACCACCAACTCCACCCCAGACCAAAACACCTAAATCCAAGAAACCAGGACCACCACCTCCCCCGATTCCAGTCTTCCCATCTCCTGGTCCACCTGGATCAAGGATCCACGTCACTGGAGCTCTGAGTGTGACCAAGAGCAACTTCACCATCCCCAAAAAGCAGACCCAGGGTGGATCCAAAGAGTCTTCAGGATCTGGATCTTCTACCACATCCAGGGCACCTCCTACATCCCAGCCCGCTGCGTCCCATGCTCAGCCACCTCACTACAAACCTGCCCAACCTGCACCACCTGCGCTGCCTCCGCAGCCACCTCCCAACAACCAGATGAGATCCAACATCCGCCGCTCGCTCACTGACATACTGTACAAAAGgGTGAGTGACAGTGATGATCTTTCCATGTCCGAGAGTGAGGTGGGCAGGCTGGCGGTCAGCATTGAGAAGGAGATGTTCAACCTCTATATGAACACGGACAGCAAGTACAAGAACAAATACAGATCTCTGATGTTCAACCTAAAAGATCCAAAAAATAAGGGTCTTTTCTATCGTGTGATTGGTGGAGAGGTCAGTCCATTCCGTCTGGTGAGACTGAGCCCTGAGGAGTTGCTCTCCAGAGAGATTTCTGATTGGAGGAAAGTGGAAACCTCTGAGGATACTAGTGGAAGATCTCATTCGGGACATCCCAAAGCTGGATCTAGGCATGATGCTGCACCCCCTGATGTGGATATGGAGGAGGCTCCTTCCATGTCTGATGGAGATGTATGTATTGCTGCAACTTCCCAGTCTCCCCGCTTGGCCTCTGGGGCAGATCATCAGGACTCAGAAAAGAGCAATGTGGTGCCTGACCTCTTGAGCAGTATGTTAAAAGACACCACAGCAGAACACAGAGCTCACCTGTTTGATCTCAACTGTAAGATTTGCACAGgccagAAGTCTGCTGATGATGAACCGGCACCTAAAAAGCCCAAAATGTCTATTCCTATTCCTGAAAAGCCTAAAACTGACCCACGACCACCCAAGGTGCCCACAGCACAAGATTCGTCCACTGCCTCCTACGCTGGCATTGAGCCCCCTCTGCCCTTCCAGCAGACTGTTATGGAGGAGCCGAGCAGTGTGATGCCCGTTGTTCAGCCCGCTGTAGCCGCTCCTGCAGTGTCCTCGGTCACGATAACCCGCCGAGACCCCCGTACTGCCAGTCACCGTTCCTCCGCACCTTTGTCTCAGACAAGTCCAGATGTGGCAGTTCCCACTGCTGCACCAATCAGTACTACGACTGTTGTAGTCCCTGTTGTGTCTGCTGAACCTCATGTGGTGGAGATGAAGGGTCCATTGCCCATGCCACCACCAGCTCCCATATCTGTGCCTAAACCCATAATTGCAAAGCCAGTCTCTTCAACAGAATCCCGACACCACAGGGGCAGCACGTCCAGcaCATCTGAGCCCCCTCCAGAAGGTGAGACGGCTCTGTTTCTCTCAGGACAAGAAATGATGTGGAAAGGATTCATTAACATGTACACTGTTGCCAAGTTTGTTACAAAGGCCTACATGGTGTCTGGGACTTTTGAGCATCTCAAGGAGGATTTGCCTGATACCATCCACATTGATGGTAGAATATCACCCCACACAGTTTGGGACTATGTAGGCAAACTGAAGACTTCACTCTCAAAAGAGCTGTGTCTTATTCGTTTTCATCCAGCAACCGAGGAGGAAGAAGTGGCATACGTGTCCCTGTTTTCGTATTTCAGCAGCCGCAAGCGTTTCGGCGTGGTGGCTAAAAACAACAAGCGCATCAAAGACCTCTACCTCATCCCTCTGAGCTCAAAGGACCCATTGCCTTCTAAACTTTTACCTTTCGATGGGCCAGGTCTGGAGCCCGCTCGTCCCAATCTCCTTCTTGGGCTTTTAATTtgtcaaaaagacaaaaaacgaACTGGAACTCCCCTAGAAAATGAGGAAAAACGTTCCAAAACACTACGAGACGAAGAGACTGGTCTTCCAAAGCCAATTCCCATTAGCAAACCTGACAAACCTTTGCGAACCAGTTTGGACTCTGTAAGCACAACACCTCCTGGAACTCCACCCCCCCTCAGCAGCTCAGAGTCCTCAGTAGCTCCACTAGCTGCAGCGTCttctgtgttttctcttttgGCATCTGTCAAGGCACCTGCTGTCTCCACAAATACAGGCAGTAATTCCCCCTCAACTACCGCTGCTTCAGCAGCGCCTGCCCCCAATGCAACCCCACTTCAGACCATCCTAAAGACACTGTTTGGTAAGAAAAAGCAAGATTCCGAAGCTTCCCAGTCACCTTCAGACCAAAGTTTGGCTGATGTTTCGGTGCCATTGTTGGATCCAATTGTCCAGCAGTTTGGAGTTACCAAAGTGAAAAAAGTGGACGAAGAAGAGGATGACAGACCCTATGACCCTGAGGAGGAATATGATCCCAGTGTTGGGTACGATACAGAAAAGCCCAGTGATCCTGTAGTACCTGTGATGATCAAACAGTCAGAAACGGTGACTCCTGCGATGGACGATGTTGCCTACGACCCTGAAGATGACTCCATTTTTGATGACGTCAAAGTTGATCCAAAGTTGAGTTTGAAGAAGCAAGTAGAGGAACAAGAAGAATTGAAGAACCAGCAACAGCAGGAACCTGATGCGTTAGTTTCCCAGCCTACTATATCTCTCCTAGGCAACAGTCAACTGGTTCAACTTGGCAAGAAGGTTGAAGAGTTGGTTTCAAAAACTTCAGCAAATCCATTGATCAATCAGAGAAGGGATCCAAGGCAGAGCAGGGACCCTAGACAGTCAGCTTCCAGTCGGAGACCAACATCTGATTCAGCAGAAAAGGAAGACTCCTCTGAAATTACTTCAGATATTATTACTACTGGTAGTACTACATTTCCTGCAAATgaagctgcttctgctgctgctactacaaTAGCAGAAAAATCACCAATTGATATTGCAGCAATCCTAGATACATTGACATCACAGAAACCTAAAGTCATAGATGTTCCCGTACAGCCGTCTTCTGTGGATGTAAAAGAAGAACCCTGTGCAACcacagaaacacaatcagaaaaTGATAAGCCATTGGATCCAGATACCCAACAAGAGACACCCAAGCAAGAGGAAGAAGAGTCAAAAAGTGAAGAGGTACCTTTTCTTGATACAGACAGCACAGAAATTTCTATTCCACTTTTAGGGGAGAAGATAGACCCTGACTTGGTTGATAGTTTTGTAGATACAGAACCGGAAACTAAACCAAATCCTAAAGAAAAGGAGGGTCCTATTGAATCAGAAGGCAAACGATTTGAAGATATTTGGCCAAATTCTGCCAGCATTCTAAAAGCAGAACCTTTACCTGTTGAGGAGCCTGTTGAATCTACTCCAACTACATATTACAGTATTTCAACAATCAGCACCTCGTTAACCTCTGTTGGAGGATCACAAGACATCACTCAAGTTAGTTCCTCATACATGGATTCACATTTACCCCATGTGCAACACATGACTTCATCAAACTCTCAAAATGAGTACAGAGGCCCTCCAGACATTCCTCCTCCAATGTCTTATCAGCCACCAGTTGGACCTCCACCCATGCTTGGGCCACCGCTAATGACTGTTCCACCACCCATGCATATTCCTCCTCCAATGCAGGGCCCTCCTCCAATGCAGGGCCTTCCTCCAATGCAGGGTCCTCCTCCAATTCAGGGTATTCCTCCAATGCAGATGCCCCCACAACTGCAAGGCCCACCTCCAACTCACAGAGAACCTGAGCTCTCTCAATATCCACCACCTGCCCCATATCCACCTTATCAAAATCAGTGGGGAAACAGTGCATCATTTGATGCTTCAAGAGGACCACCCCCACCAATTATTACACCTCGGGGACCTCCTCCACAGATGCCACCAGTGGGTCAGAGAGGACCTCCACCACAAATGTTCAATAGTAATATGCCCCCACAACCTCATGTGGGACCACGGGGCCCACCTCCTGGTCCACCACCCTCTGCTGCAGCACCACCCCCAAGTTTTGATGGACAAAGATTTAATGGTCCTCCACCACCTTTCAACTTTGCAGGACCCAGGGGCCCACCTCCATTTGCAGGTCCCCCTCCTGGCCACTTTGACAACAGAGCACCACCACCATCTCACTTCCCTGGGCCAAGAGGCCCACCTCCACACCACAATATTGTAGAGCATGGACCACCCCCTAACATCCCAAGGGGACCTGGTGATCAGTATGATAATGAGGGTGGAAGTTCCTACAAGCAGGGAATGGAACAGCCCcaagcccaaaacacaccacacagttACAGAGAGAATCAGGGTCCCACACATGGCCCTGCCTTTAGAGGGCCTCCACCAAACCACTTTGAAGGACGAAGAGGTCCATCTGGAGGGGATTTGGCAGGGCATAGATTCCCCCCTCCAAACCAGTTCCGTGGCTCCCCACCACATAGAGGAGGATCGTTTGATGAACCAAGAGGAGGGTTAACCCAAGAGTTCGAGAGAACCAGAGGTCCTGCACCCCAGCCATTTGGTGGGCCTAGAGGTCCTCCACCAGGACACTACTCTGATAAAGATGCAGGAGGCCAGTCTTCACGCTACCACTTTGAAGAACATGCAAATGACATTAGGCCTGTACGAGGACCTCTGTTACCTACGCCTTCTGAAGGTCCCATCTCAATGCCTCCTCGCTTGGGTGGCCACAGCCCAGAGTCCCACCGTGATGACCACTGGAGAAGACACTCCCCTGAAATGAGGAGGCGCAGTACCTCTACTAGGGACGGTTCTGAACCTCAAGAGAGGTCCAGTAGGTTTGACAGTGGTCCCCGTGACCGAGAGGGCCCATCTAGgctctctgaagaaagacacaGAGATTTGTCAGAGGACcggaggagagacagagagcgggATGGACCACATGGGGGCAGGCCTTGGGGCTGGAATAGAGACCGTGAATCTGATCGTGGCAGAGAGCGAGAAGGAGACCGTGGCAGGGAGCGAGAACGAGAGCGGGATCGCAGCCGTGACAGGGAACGAGAGAGGGACCGCAGCCGCGACAGGGAACGAGAGAGGGACCGTAGCCGGGACAGAGACAGGGACAAGGATCACGATCGCACCAGGGACAATCAAAGGGAGAAAGAACGCAGTAAGGAAAGAGATCGCAGTAGAGGCAGGGATGCTGATCGACACAGAGAAGGTGATGGAGACAAAAGGAGGGATCGGGACCGCGAACGAGACAGAGACCGTGGCAGGGAGCGAGAATTTGACAGAAAGGATCATGACCGAGACAGGACAAAGGGCAGAGAACGAGACCgtgacagtagagacagtagagATAAAAGACGAGAACGCTCAAGAAGCCGTGAACGAGACCGTGGAAAAGACCGAGACCGACGTGACAGGGACAGAGACCGGGAAAGGGAGAGGGACAACAGAGATAGGAGGGAGAGAAGTAGaagtaaagagagaaaggaagagcgTAGAGAAAAATCAGAGGCTTCGAAGGACATTGAGAGACCTGCTGATATGGAAAGCGCATCTTAAATTTCTTGTTCTGGTCTCTTTTGTATTCACAACGGTTTTGACAAGTTTTGATACTCGCAGTTTTATTTCCAAAAACTGATTTGCATGGATTGAAAAGTATTCTATAtgtgcaggtttttttttttttttttttttgcccactTCCCTGCTCTTCctccttttttccccctccctTCTCGGTACCCAATCGATCTCTTCACtgcatattttatgtttttcttttattacattcaaaaaCAGGTCTTGAGACTTTCCGTTAAATATCCTGTTAAAGTGACAGTGCCGTATCATGTTGACACACATGCTCCCTTCCtgttaaagtatattttaagagtacataaaataactttaataaacaaagacatgtaaatatgtatgtgtgtatatacaggtATGTTttaacgtgtttttttttctaactagAAGATTGAAGCCATATAGCTTTGATTcatgtataataaaaaagaaaaaaaaaatctgaatgtaTTTCAACAGTAACACTTGTTTAGCATTGAATCAATAATATACCTGTAGGCTGTAATAAATCAGCTGTCCAATAAGCTTTGTCTGGTTTTCTTTGAAACCTCTAATAAACCCTTCTTTGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262559 lncRNA downstream 76971 28395697 ~ 28469608 (-) True G193477
TU262496 lncRNA downstream 227875 28317344 ~ 28318704 (-) True G193435
TU262497 lncRNA downstream 228858 28317344 ~ 28317721 (-) False G193435
TU262486 lncRNA downstream 301877 28243808 ~ 28244702 (-) True G193426
TU262484 lncRNA downstream 310110 28235165 ~ 28236469 (-) True G193424
TU262660 lncRNA upstream 24709 28595651 ~ 28596007 (-) True G193540
TU262689 lncRNA upstream 304975 28875917 ~ 28930921 (-) True G193568
TU262778 lncRNA upstream 604972 29175914 ~ 29176124 (-) True G193637
TU262779 lncRNA upstream 605513 29176455 ~ 29176865 (-) True G193638
XR_002651643.1 lncRNA upstream 656762 29227704 ~ 29232967 (-) True LOC111195426
XM_022682761.1 mRNA downstream 39023 28459080 ~ 28507556 (-) True LOC103043100
XM_007247713.3 mRNA downstream 217291 28323355 ~ 28329288 (-) True LOC103024327
XM_022682757.1 mRNA downstream 238531 28302568 ~ 28308048 (-) True LOC111195424
XM_022682756.1 mRNA downstream 245571 28296305 ~ 28301008 (-) True LOC111195423
XM_022682755.1 mRNA downstream 269242 28269957 ~ 28277337 (-) False LOC103025279
XM_022682150.1 mRNA upstream 12036 28582978 ~ 28586222 (-) True LOC111195343
XM_022682767.1 mRNA upstream 580779 29151721 ~ 29173495 (-) True LOC103042433
XM_022682771.1 mRNA upstream 606404 29177346 ~ 29219008 (-) False LOC103040895
XM_022682769.1 mRNA upstream 606404 29177346 ~ 29212246 (-) False LOC103040895
XM_022682770.1 mRNA upstream 606404 29177346 ~ 29212233 (-) True LOC103040895
TU262455 other downstream 333509 28210191 ~ 28213070 (-) True LOC111195422
TU262456 other downstream 333861 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other downstream 333861 28210024 ~ 28212718 (-) False LOC111195422
TU262199 other downstream 1069710 27425042 ~ 27476869 (-) False LOC103046149
TU262021 other downstream 1513490 27031663 ~ 27033089 (-) True G193097
TU262651 other upstream 5165 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 5165 28576107 ~ 28583747 (-) False LOC111195343
TU262661 other upstream 26613 28597555 ~ 28598638 (-) True G193541
TU262902 other upstream 1594819 30165761 ~ 30180126 (-) True G193737
TU263040 other upstream 2238852 30809794 ~ 30830946 (-) True spcs1