RNA id: XM_022682790.1


Basic Information

Item Value
RNA id XM_022682790.1
length 2213
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC103036366
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31238471 ~ 31287104 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacaaacacactgacacacttcCTCAAGCAAGCTCTCAGTCCGTGTGCTctgctctcaacacacacactctaacacacacacttacactgctaaacccaagaaaaaggaGTTTTCGGAGTCTCTGAAAAGcaggTGAGAGTTCACCATGGCTCCGTTCCTGCGGATCGCCTTTAATGACTTTAATTTGGGGAACCTCCCTCCTCTGACTGATCAGCCCTTCTGTGCCATCAAGATGAAGGAGTCTCTCAGCACAGAGCGAGGAAAGACCCTGGTCCAGAGGAAGCCCACCATGTACCCGGCCTGGAAGTCCAGCTTTGATGCTCATATCTACGAGGGCCGTGTGATCCAGGTTCTCCTGATGAAAACCGCTGAGGAGACTCTCTCGGAAGCAACGGTGGGCGTGTCCGTCATCGCCGAGCGCTGCAAAAAGGGAAACGGCCGTGCAGAATTCTGGGTAGACCTGCAGCCCTCTGGGAAGGTGATGATGTCGGTGCAGTTTTTTGTGGAGGATACAGACACAGaaaGCAGACCTTCAGTGcgggagaaggaggaggatggAATCTTAACTCTAAACAGGAGGAGAGGAGCCATCAAACAGGCCAAAGTTCACTTCATCAAGAACCATGAGTTCACCGCCACCTTCTTCAAACAGCCCACCTTCTGCTCCGTCTGCAGAGAGTTCGTCTGGGGTCTTAACAAACAGGGCTACAAATGCAGACAATGCAATGCGGCCATTCACAAAAAGTGCATTGATAAGATCATTGGAAGATGCACAGGAACTGCAGCCAACAGCCGAGATACTGTGTTCCAGAAAGAACGCTTCAAGATCGACATGCCGCATCGCTTCAAGACGCACAACTACATGAGCCCCACCTTCTGCGACCACTGCGGGAGCCTGCTGTGGGGAATGGTCAAGCAAGGCCTGAAATGTGAAGATTGTGCTATGAACGTCCATCACAAATGCCAGACTAAAGTAGCCAACCTCTGCGGAATAAACCAGAAGCTTCTAGCTGAGGCTCTGACTCAAGTTAGCCTGAAATCATCTACCAAGAGGCCTGATCCCACTCTGTCAGACATTGGCATCTATCAGGATATAGCCAAAAACACTCCAGCAGACCCTAGTGATAGCAATCAGTATGGGAAGCTATGGGATGGCAGTACCCCAACGCCCCCTGCTGCACCCTCCGCCTCAATCACACATCAAACGCGCATCAACTTCGAGAACTTTGTGTTCCATAAGGTTCTGGGCAAAGGCAGCTTTGGCAAGGTGCTGCTGGCTGAGCTGAAAGGGCGTGGCGAGTACTTTGCAGTGAAGGCTCTGAAGAAGGACGTGGTGCTGATGGACGATGACGTGGAGTGCACCATGGTGGAGAAGAGGGTTCTGTCATTAGCCTGGGAAAATCCTTTCCTCACACACCTTTACTGCACCTTCCAGAGCAAGgagCACTTGTTTTTCGTGATGGAGTATCTGAATGGAGGAGATCTGATGTTTCACATTCAGGATAAGGGGCGTTTTGATCTTTTTAGAGCCACGTTCTATTCAGCGGAAATTATCTGCGGCCTGCAGTTCCTCCATTCCAAAGGCGTTATTTACAGAGACTTGAAGCTGGACAATGTGATGCTGGATAAAGACGGCCACATTAAGATAGCAGACTTTGGGATGTGTAAGGAGAACATGATTGGAGAGAACCGAGCCACGACTTTCTGTGGAACTCCTGATTACATTGCGCCAGAGATCCTACTCGGCCAGAAATACACATTCTCGGTGGACTGGTGGTCGTTTGGAGTTCTGGTTTATGAGATGTTGATCGGTCAGTCGCCGTTCCAAGGCGATGATGAGGATGAGCTGTTTGAGTCGATCAGAATGGACGTCCCGCACTATCCCCGCTGGATCACCAAGGAGTCCAAAGACCTGCTGGAGAAGTTATTTGAGCGAGATCCGACCCGTCGGCTTGGCGTCGTGGGGAACATCCGAGGACACTCCTTCTTCAAGACCATCAACTGGCCGGCTCTCGAGAAGAGAGAGGTGCCTCCCCCCTTCAAGCCAAAAGTGAAATCCCCCAACGACTGCAGCAACTTCGACCGCGAGTTCCTCAGCGAGAAGCCCCGCCTCTCACACGCCGACAAGAACCTGATCGACTCAATGGACCAGACGGCCTTCTCCGGCTTCTCCTTCATCAACCCCTCCATGGATACCATGCTCGAGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263200 lncRNA downstream 43990 31194164 ~ 31194838 (-) True G193964
TU263189 lncRNA downstream 69945 31137974 ~ 31168883 (-) True G193959
TU263212 lncRNA upstream 14376 31301480 ~ 31304310 (-) True G193968
TU263223 lncRNA upstream 124815 31411919 ~ 31414467 (-) True G193978
TU263226 lncRNA upstream 130645 31417749 ~ 31418526 (-) True G193980
TU263301 lncRNA upstream 163713 31450817 ~ 31529927 (-) False cadps
TU263304 lncRNA upstream 208898 31496002 ~ 31497236 (-) True G194034
XM_022682787.1 mRNA downstream 7999 31195822 ~ 31230829 (-) False sfmbt1
XM_022682786.1 mRNA downstream 8001 31195822 ~ 31230827 (-) True sfmbt1
XM_007228721.3 mRNA downstream 44779 31170298 ~ 31194049 (-) True LOC103037496
XM_007228720.2 mRNA downstream 66348 31170298 ~ 31172480 (-) False LOC103037496
XM_022682784.1 mRNA downstream 382279 30847297 ~ 30856549 (-) True gnl3
XM_022682792.1 mRNA upstream 18463 31305567 ~ 31370546 (-) False LOC103035852
XM_007228716.3 mRNA upstream 18463 31305567 ~ 31370546 (-) False LOC103035852
XM_007228715.3 mRNA upstream 18463 31305567 ~ 31370546 (-) True LOC103035852
XM_022682793.1 mRNA upstream 143787 31430891 ~ 31435487 (-) True fezf2
XM_022682795.1 mRNA upstream 163699 31450803 ~ 31654210 (-) False cadps
trnae-cuc_20 other downstream 63950 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 66359 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 407882 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 407882 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 1058702 30165761 ~ 30180126 (-) True G193737

Expression Profile