RNA id: XM_022682868.1


Basic Information

Item Value
RNA id XM_022682868.1
length 1629
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC111195461
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23798758 ~ 23801417 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agttaactaacacacataaaacctagctaactaacacacataactctagctaactaacacacataaaaCCTAGCTACCTCAGCTAACTAATTCTAAAAATTAGAGTCACAAAGTGTCCTCGTCAGATCTGGGGGTTAAATAAGCTGGAAAACATCccaatatcttgattactagtttaaATTCAGTCAAATACAGAAGAATAACGACCTGAAGATGTTTAAAAACGGTACTAATACCTTAAAATGTACAGGTAACCAGTGGAATTAGTGgcactagctagctagctagcctggTGGTCACCATGGCTACTGCAGAAGAGATTCCTCTGACATCACAGGTATGACATCACACCTGAGCCCATATAAGCAGGATTCCATCAGTTCGGGTTCAGACTAGAGCTAGGAGCCACAGTATAAGGACTTCGGAGGAAATCTTGTAGTTACTGAGGACGAGCAGCTTTAGTGAAGAATGTCTTTACTGAACTCTGTAAAGACTGCGGTTCAGTGACCGGTGAAGATCAACCGGCAGAGTTGGGAGAACTTCCAGCACGGGAAGACCAACTGCCCCAGCAGGAGAGAGAAACGTTCCAATGTGTTAATGGACGGACGTGAGGACGCTCTTGCACTGACACAGGCCAGACTCCAGCTGGAGAGAGATACTGTCTTTAGCACGAGCAGAACCTCTCGTAAGAGGAACCTGGCGGAGACACCAGAGAATGAAGCTCCAGTAGCGAACAAGGCTCCAATCCAGCCGGAGAGAGGTGCATTATGGGACAGATGTCCGTTTGATACTGTCTTTAGCACTAGCGGAACCTGGAGGAACCCGGAGAAGACACCAGAAGATGAAGCTCCAGTAGTGAAAAAGGCTCCAATCCAGCTGGAGAGAGctcCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGTCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGAAGGCCAAGGTCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCGAGGCCTCGTCCCGTTCTTCAACAAGTCTCTGAGAGGAAGAACGGCTCCGGACGTGCTGATCATCCACTGTGGAGGGAACGACCTCGGAGGGATGAACGCCGTTCATCTCATCGCAGAGATGAAGGTGGATCTGCTTGATCTCCACCGTCGTTTCCCACACATGAAGATCATGCTGTCAGATATCACCCCAAGACGTCAGTGGAGGTCCACCATTCACCCTAAGCAGATCGACATGGCCCGGAAATGCGTAAACCGCGAGATGGCCGACTTCATTTTGGGAGTGGAGGGGGTTGTTATTCATCACCCGAATATCCTGTTCTACAACCCTCGGCTCTTTCTCAGAGACCGGGTTCACCTGTCTCCTTTGGGCAACgaactgtttttaaatgacattGCAGAATCCCTAAAATCCTTCATCAAATAAATGTGATTCTGCTGAAATCATCTGGATTCATCTGGATTAATTCAACACTGAGAAACACCAGGAGACTGAGGACTTTACAGTGTAATGAAATCAACAACTCAGTATTAGATGctaataaatgttaaagttttatgttatataatattaaaaatctgtACACTTAAATAAagtctattttgtaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261126 lncRNA downstream 191727 23602319 ~ 23607031 (-) True G192439
TU261101 lncRNA downstream 239582 23544535 ~ 23559176 (-) False G192428
TU261089 lncRNA downstream 250322 23545179 ~ 23548436 (-) True G192428
TU261099 lncRNA downstream 250322 23545179 ~ 23548436 (-) False G192428
TU260993 lncRNA downstream 469445 23329074 ~ 23329313 (-) True G192365
TU261196 lncRNA upstream 75218 23876635 ~ 23884538 (-) True G192484
TU261312 lncRNA upstream 190779 23992196 ~ 24034791 (-) False G192574
TU261313 lncRNA upstream 190779 23992196 ~ 24034791 (-) True G192574
TU261314 lncRNA upstream 190779 23992196 ~ 24049734 (-) False G192574
TU261318 lncRNA upstream 253877 24055294 ~ 24055585 (-) True G192578
XM_022682680.1 mRNA downstream 102511 23682209 ~ 23696247 (-) True LOC103041505
XM_007234731.3 mRNA downstream 106900 23682209 ~ 23691858 (-) False LOC103041505
XM_022682679.1 mRNA downstream 118367 23673108 ~ 23680391 (-) False LOC103042306
XM_007234734.2 mRNA downstream 118367 23673108 ~ 23680391 (-) True LOC103042306
XM_022682677.1 mRNA downstream 138466 23648266 ~ 23660292 (-) True LOC103041805
XM_022682682.1 mRNA upstream 147114 23948531 ~ 23956337 (-) True LOC103046362
XM_022682681.1 mRNA upstream 147114 23948531 ~ 23956335 (-) False LOC103046362
XM_007228558.3 mRNA upstream 156411 23957828 ~ 23970167 (-) False zc3h11a
XM_015602151.2 mRNA upstream 156411 23957828 ~ 23970167 (-) False zc3h11a
XM_007228559.3 mRNA upstream 156411 23957828 ~ 23970167 (-) False zc3h11a
TU260862 other downstream 739953 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 1009803 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 1075853 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 1436301 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 1947116 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 1410258 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2073493 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2073493 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 3230246 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 3623625 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile