RNA id: XR_002651580.1


Basic Information

Item Value
RNA id XR_002651580.1
length 938
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC111195339
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27382980 ~ 27384041 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TtgaatgtgcattttttttccttcccacCTTGTAAAATCCTGCCTTTGCAgtccactttaaaatatttccaaacaGAGAGGTGTAATACGCTCTTTCGATCTTACAGCTGCTGTTCACactgctaataaataaaaaacaaacccaGTTGATTTTATCGGAGCGCCAGTACCCAAACccgactgactaaaactttcaatCGTAACCACCTTACACTTAACGATTGAGATGACACGACCGCAACTCAACTGCAGCTCGACTCTAGCCAGACTCTAGCCGTGATTTTTATCCtgactctggaaatttgtctgcaacTGTGAAATCATTGGAAAATCGTTATGTACCTGAACTCTCTTCACCCTTAATGTAGCAGCTACCCACTGAATAACTGTTAGCCTGTTCTATAGCGACTGTAATTtccttctgtctgtttcttaCACTCTGTAGgtacttatatatattttttattgaacgtGGCAGCGTGCCGACAATCACAAGTATTGCAAATGTTGGGATAAATTTCAGCCAATTTAACTTTACTAGAATGTGCTCTGTGTACTCTGCAGGTACTTCTAAGGCAGCTAGTTTAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACATCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262141 lncRNA downstream 12547 27370175 ~ 27370433 (-) True G193185
TU262137 lncRNA downstream 26667 27355978 ~ 27356313 (-) True G193181
TU262133 lncRNA downstream 51818 27328742 ~ 27331162 (-) True G193179
TU262127 lncRNA downstream 58141 27324406 ~ 27324839 (-) True G193178
TU262093 lncRNA downstream 77321 27295728 ~ 27305659 (-) True G193154
XR_002651639.1 lncRNA upstream 221 27384262 ~ 27386904 (-) True LOC111195418
TU262158 lncRNA upstream 5682 27389723 ~ 27390148 (-) True G193198
TU262159 lncRNA upstream 6753 27390794 ~ 27391528 (-) False LOC111195340
TU262160 lncRNA upstream 16796 27400837 ~ 27401642 (-) True G193200
TU262192 lncRNA upstream 67704 27451745 ~ 27463954 (-) False LOC103046149
XM_015605469.2 mRNA downstream 79040 27301296 ~ 27303940 (-) True LOC103029919
XM_015605466.2 mRNA downstream 83409 27296666 ~ 27299571 (-) True LOC103046766
XM_015605468.2 mRNA downstream 90171 27287220 ~ 27292809 (-) False LOC107197599
XM_015605467.2 mRNA downstream 90171 27287220 ~ 27292809 (-) True LOC107197599
XM_007247738.3 mRNA downstream 102926 27274657 ~ 27280054 (-) False LOC103031188
XM_022682148.1 mRNA upstream 6764 27390805 ~ 27391571 (-) True LOC111195340
XM_007247730.2 mRNA upstream 61438 27445479 ~ 27453376 (-) True bcl2l15
XM_022682732.1 mRNA upstream 82751 27466792 ~ 27701331 (-) False LOC103046149
XM_022682731.1 mRNA upstream 82751 27466792 ~ 27701331 (-) False LOC103046149
XM_022682736.1 mRNA upstream 373186 27757227 ~ 27874978 (-) False kif21b
TU262021 other downstream 349891 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 1504327 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 1504327 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2165430 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 4324175 23054633 ~ 23058805 (-) True G192251
TU262199 other upstream 41001 27425042 ~ 27476869 (-) False LOC103046149
TU262456 other upstream 810338 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 825983 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 826150 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 1192066 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile