RNA id: XM_022686049.1


Basic Information

Item Value
RNA id XM_022686049.1
length 751
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC111196687
representative True

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 192861 ~ 194963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTAGATCTAGTGCAGATCTGTAAAACTGAGCTCAGGATGAAGATCCTCCTCATCTTCACCCTCTACCTGATCTCAGGTGGTGAAGCCTCCAGTGAAGTTAGTGGATATTCCGGAGGAGGAGTTCTCATCAAGTGTAAATATGATAAAGATCACACATCAAACCCAAAGTACTTCTGTAAGGATTCAATAGGATGTACCAAACAGATCAGTACTGAAGTTAAGAATGAATGGGTAAATAAAGGAAGATTCTCACTGATTGATAAACCCAGCTCTGCAGAGTTCTGGGTGATGATCAGAGAACTCACTGTTAATGATTCTGGAACGTACCAGTGCGGAGTTGATATAGAATGGGGGATAGACAATCGTGCAGAAATGGAACTGAAGATACATGAAGATATCAGCTATATGAGGAGCATCAGTGTGAATGGTCATGTTGGATCTGAAATTAATATCAGCTGCAATTACCCACAATCCCTCATCAGTAAACCCAAGTTCCTCTGTAAGAGAAGGAGCACTGTGGACTGTTATTATACAGCATCTGTTAAAGAGAGTAAAAGACGGATAAAGGAGGGAAGATTCTCTCTGTATGACAATAAAGCAAAGAAGACTTTCACAGTGAGCATCAGCAGAGTGACTGAGGGAGATTCTGGTGAATACTGGTGTGGAGCTGAATCAGACTGGGAATCTGATCACGGATACAAGGTTGATTTCACACAGATCAACCTCACAGTCACTGGTGAGAGCTTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320511 lncRNA upstream 25254 160915 ~ 167623 (+) True G235513
TU320479 lncRNA upstream 38224 143600 ~ 154653 (+) True G235498
TU320500 lncRNA upstream 47682 144347 ~ 145195 (+) True G235508
TU320466 lncRNA upstream 103473 76417 ~ 89404 (+) True G235490
XR_002652211.1 lncRNA downstream 432 195395 ~ 198101 (+) False LOC111196695
TU320521 lncRNA downstream 3103 198066 ~ 198841 (+) True LOC111196695
TU320529 lncRNA downstream 36586 231549 ~ 232370 (+) True G235526
TU320530 lncRNA downstream 37505 232468 ~ 234112 (+) True G235527
TU320617 lncRNA downstream 50452 245415 ~ 245619 (+) True G235593
XM_022686048.1 mRNA upstream 15099 162608 ~ 177778 (+) True LOC103028511
XM_022686047.1 mRNA upstream 31402 156046 ~ 161475 (+) True LOC111196686
XM_022686046.1 mRNA upstream 62536 121000 ~ 130341 (+) True LOC111196685
XM_022686063.1 mRNA upstream 79469 106202 ~ 113408 (+) True LOC111196693
XM_022686045.1 mRNA upstream 90183 95707 ~ 102694 (+) True LOC111196684
XM_022686050.1 mRNA downstream 5677 200640 ~ 208869 (+) True LOC103028199
XM_007239019.2 mRNA downstream 16941 211904 ~ 216369 (+) True LOC103027884
XM_022686061.1 mRNA downstream 22850 217813 ~ 224768 (+) True LOC111196692
XM_022686051.1 mRNA downstream 31886 226849 ~ 229983 (+) True LOC111196688
XM_022686053.1 mRNA downstream 47352 242315 ~ 261740 (+) True LOC111196689
TU320439 other upstream 171310 20689 ~ 21567 (+) False LOC103028116

Expression Profile