RNA id: XM_022662351.1


Basic Information

Item Value
RNA id XM_022662351.1
length 2729
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC103046842
representative True

Chromosome Information

Item Value
chromosome id NW_019171597.1
NCBI id APWO02001195.1
chromosome length 221831
location 93069 ~ 100829 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgatcCCCACAGACGAGACAGAAACAGGAAGTGAGTCTCCAGACACAGACTCTGCTTCTAAAGCATCTCAGGAAACAGACTCTCCAGtacagctcaaacccctCCCGGTACAGCTCAAACCCCTCCcagtacagctcaaacccctcccagtacagctcaaacccctCCCGTACAGCTCAAACCCCTCCcagtacagctcaaacccctCCCAGCACAGCTCAAACCCCTCCcagtacagctcaaacccctCCCAGCACAGCTCAAACCCCTCCcagtacagctcaaacccctCCCAGCACAGCTCAAACCCCTCCcagtacagctcaaacccctCCCGGTACAGCTCAAACCCCTCCCAGTACAGCTCAAACTACTCCCAGTACAGCTCAAACTACTCCcagtacagctcaaacccctCCCAGTACAGCTCAAACTACTCCCGTACAGCTCAAACCCCTCCcagtacagctcaaacccctCCCAATGGAGCAGAGAAGGACGCTGATGATAAGACTGATACGGATAAAGATTCTTCCAGTAAGGAGCAGTCAGACACCGACTCAGCGGATCAGAAGGATTCCTCAGAGGACACATCGGATACACCTGATGCTGCAGACAAAGAAACTTTTGACTCAAACGAGTCAGACAAGGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAGGGACAGTGACACAGACAGTGATATAGACAGTGACGGAGACAGCAAGGACGATACTGATGCTGAAGACAAGGACAGGGACCGTGACACAGCAGATACTGCAGACGCAACAGAAACCAAGGACAGCACTGAAGACACGAGCAGAGACAGGGACACAGATAGTGACAAAGACAGCAAAAAAGACAGTGACAAGGACAACGAAAAAGACAGTGACAAAGACAGCAATAAAGACAGCGACAAAGACAACGATAAAGACAGCGACAAAGACAACGATAAAGACAGCGACAAAGACAACGATAAAGACAGCGACAAAGACAACGATAAATACAGTGATGGGGACAGAGATGGAGACAAAGACAAGGACAGCGATGGAGACAAAGACAGGGACAGTGACACAGACAGTGATATAGACAGTGACGGAGACAGCAAATCGGACAGCGATGCAGACAGTGGCGTAGACAGCACAGGTCCAAAAGGCGAGGATGAAGGTTTAGACAAGGACAAGGACAGCTCACACAAGACCAGCGACGACACCAGCAACGACAGCAATGAGGGAAAAGAGATCGAGAGGGAAACCACGACTGAAAACGAAGACAAAGACTCTGAGAAATCTAAAGAGACCGCCGAAGAACCGTCTTCTGTAGACTCCCAGGAAAGCCAAAAGACCGCCTCCTCCAGCTCAGACTCCTCCCACTCCtcaagcaaagaaaacaaccaGGACCAGGAGAAGAGCAGCGCCGAGTCCACTGATAAAGACAGCTCAGACAGTTCGGACCGGGACAGCTCCGAGACCGAGGGAGAGGTTGCAGATGACAGTGACAGCAGCCCAGAGACGGAGACGTCAGATTCTCCAGACATCTCACTGGAAACAGGAGAAGACTCTGACAGTGATTCCACTGATGAAAACGACAACAGCGAGTCGATGGATGCAACAGAGTCGACGTCACATGatGAGACCACTGATGAAGAGACGGACACAGACACTACTGTCTCTCCCATCGACGTCCCGGACCAGTCAGGTCATataaacaacacaacacaagCGCCTGATGGGATACCCCCCCCGGTCAAGTCTTAGCATCCAGGATATAATAACATGCAGCAGTTTAACAGGGTCATCCGACACAACAACAGAAGCAACTCAAGTGGCCATAATAACCCGTCGCATTCTGATTCCCGTTAACACACGACACGTTTAAatgccatctctctctctctctctctctctctctctctctctcacatggtGAAGGGTTCTATCTAGAGGGTTCTGGGATGCACGTTAAATTATTCAGCTGTTTTTGGTGTACATTCTGTTTCTCCCATATTTGATAAACTAATTTCTTTTTCATGTAACTTATGAAGAGGATCTCAGAGGTCACGTTGGCTCTTTAGTAGTTAGTGTTAAACAATTAAAGGTCAGTGGAGAGTGATGGTGATTCACGGTTTCGAGTCTTTTCTGCTTTTCGTTTGTTTGCTGCTGTCTGTGGCCCTGGTGGTAAGACATCCTGTACAACTCCTACACTGACAATGTTCTCCTGACTCAGCTAAACGTCCGGTGGTTCACATCTCCAGCGCGAGAGCCGGACTGTAGATGAGGCTGTTTTCTACAAATTAAAGTGTACAGACTGTTTTATGAAACACTCCTTTACGCTGGCGTCTCTGAAGGCGTATTAACTAATACTGTAGTGACGTAATGGCACAGACTGTTTTGTGAATTACTGAGGTAACACAGATGTATAGATTTAATTAATGTCACTCAAATATGTATGCAGGGAGCAATTCTAATAAAGACTGAGTTGTCAGACCAAA

Function

GO: NA

KEGG:

id description
ko04725 Cholinergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351484 lncRNA upstream 37345 45376 ~ 55724 (+) True G256822
TU351481 lncRNA upstream 48189 44439 ~ 44880 (+) True G256819
TU351476 lncRNA upstream 72094 20630 ~ 20975 (+) True G256816
TU351527 lncRNA downstream 34202 135031 ~ 137329 (+) True G256835
TU351573 lncRNA downstream 77917 178746 ~ 180396 (+) False G256865
TU351574 lncRNA downstream 77917 178746 ~ 179612 (+) True G256865
XM_022662364.1 mRNA upstream 24713 62310 ~ 68356 (+) True LOC107197357
XM_022662352.1 mRNA downstream 6844 107673 ~ 114556 (+) True LOC111188544
XM_022662353.1 mRNA downstream 11580 112409 ~ 130974 (+) False LOC107197265
XM_022662358.1 mRNA downstream 11580 112409 ~ 130974 (+) False LOC107197265
XM_022662360.1 mRNA downstream 11580 112409 ~ 130974 (+) True LOC107197265
XM_022662362.1 mRNA downstream 11580 112409 ~ 130974 (+) False LOC107197265
TU351570 other downstream 68872 169701 ~ 170409 (+) True G256864
TU351575 other downstream 78300 179129 ~ 181336 (+) False G256865

Expression Profile