RNA id: trnac-gca_22


Basic Information

Item Value
RNA id trnac-gca_22
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnac-gca_22
representative True

Chromosome Information

Item Value
chromosome id NW_019172608.1
NCBI id APWO02002206.1
chromosome length 232625
location 216870 ~ 216941 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGGCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391696 lncRNA upstream 82117 132771 ~ 134753 (+) True G285052
TU391692 lncRNA upstream 98237 117555 ~ 118633 (+) True G285049
TU391689 lncRNA upstream 116152 89489 ~ 100718 (+) False LOC103033900
TU391679 lncRNA upstream 148986 65790 ~ 67884 (+) True G285043
TU391668 lncRNA upstream 172249 43647 ~ 44621 (+) True G285037
XM_022664237.1 mRNA upstream 37077 166138 ~ 179793 (+) True LOC103034659
XM_022664238.1 mRNA upstream 85777 89227 ~ 131093 (+) True LOC103033900
trnac-aca_1 other upstream 86 216713 ~ 216784 (+) True trnac-aca_1
trnac-aca other upstream 243 216556 ~ 216627 (+) True trnac-aca
trnac-gca_21 other upstream 1277 215522 ~ 215593 (+) True trnac-gca_21
trnac-gca_20 other upstream 11920 204879 ~ 204950 (+) True trnac-gca_20
trnac-gca_19 other upstream 12199 204600 ~ 204671 (+) True trnac-gca_19
trnac-gca_23 other downstream 290 217231 ~ 217302 (+) True trnac-gca_23
trnac-aca_2 other downstream 447 217388 ~ 217459 (+) True trnac-aca_2
trnac-aca_3 other downstream 808 217749 ~ 217820 (+) True trnac-aca_3
trnac-aca_4 other downstream 1169 218110 ~ 218181 (+) True trnac-aca_4
trnac-gca_24 other downstream 1423 218364 ~ 218435 (+) True trnac-gca_24

Expression Profile