RNA id: TU393136


Basic Information

Item Value
RNA id TU393136
length 214
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G286116
representative True

Chromosome Information

Item Value
chromosome id NW_019172643.1
NCBI id APWO02002241.1
chromosome length 143949
location 24309 ~ 24522 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGTTGTTTAAGAGAACATAGGTTAATTCCTATCTTCAGTTAGCTTGgctcatagactgtgtatagctggacagagcatcatctcttaaaagtgaagccaccacaggtcgggcgccccctgctgttcggttgcagaaagctgtgtaaccccacccatccccataggtttcaatggcaaaacagaacaactttcaatcacgtttttttccaatat

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393155 lncRNA downstream 23082 47604 ~ 48563 (+) True G286121
TU393165 lncRNA downstream 80502 105024 ~ 107433 (+) True G286129
TU393166 lncRNA downstream 80502 105024 ~ 107222 (+) False G286129
TU393171 lncRNA downstream 80502 105024 ~ 107222 (+) False G286129
TU393199 lncRNA downstream 87816 112338 ~ 112752 (+) True G286144
XM_022664314.1 mRNA upstream 3055 1043 ~ 21254 (+) True LOC111190604
XM_022664313.1 mRNA downstream 4257 28779 ~ 73413 (+) True slc6a5
TU393141 other downstream 42276 66798 ~ 74634 (+) False slc6a5

Expression Profile