RNA id: TU407986


Basic Information

Item Value
RNA id TU407986
length 1552
RNA type TUCP
GC content 0.48
exon number 13
gene id G296679
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1191763 ~ 1200788 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaacatcctcacTCTACACTCAAATACACAGATCATACTAAATCATCTGAACCTGATCACAGAACAAAGAAAAGCtcatgcagacagacagacagataggaaGTGAGGTGTACCTTGGCCTCAGGTGAAACTCCAGGTTTGGGAGGGAACTGCACCTCTGTGGCTTTGAGTATAGTGTTCTCCTGCAGGATGTCTTGCTGTGACTGATTATGACCAAACGGCTTTTTCCCATAGAGGCACTGGTAAAAGATCACTCCAACTGACCACACGTCCACCTTGTTGGAAATCTTAGGTGGCTCCTTCCCAACAACAAAACATTCAGGTGGCAAGTACCAGTAGGTCCCAGCTCCTTGCGAGGTCAGCTCCATGCCATCTACACCATAGTTATCATCGTCCATGATCTTGGACAAGCCGAAGTCTGTAATCTTGATCTCCCCACATGCTGTGCCGTTTACCAGTAGGATGTTACCTGGTTTAAGGTCGTAATGGATAATTGGTGGGCGGATCTCGTTCAGGTATTTGAGTGCGTTGACCACCTGCATGATGATGGACCGGCCTTCTTTCTCAGACATTAGCTTATGCTGCTTCAGGTAGAAGTCCAGATCATTGCCCTCGCAGTACTCCAGAACTGTGCAAAACGAGTCAGTGTCCAGGGAAAAGTAATCATAAAGTTTGACTATTCTGGGATGGTCCAGCTCCTTGTGAATGCGGTATTCTCGGCAAGCATGTTTGTGGTAGTTCTCCTTCTTCTCATCTCTCCAGTTTTTATTGAGCTGATGGATTTTTACAGCCACGTATCTCTGCTCTGTCAAGTCGAAGGCCTTGTAGACTTCACTGAAGCCTCCTCTGCCCAGCAGGTGTAGCAGCAGATAGCGGTCATTCAGTGTGGGGTGATCTTTGAACTGAGAGTTATCTTCGTTGTGTATTCTCTTGAGTTCTCGGATGTGAAGATTACGCACTCGCTCCAACCGTTCCAATTCCACTTGAATCTCAGCCTCCTCCTTTTTTAGGTGGCCGAGTCTCAATTTGAAAATCTCTTCCTGCTCGTGATATTCTGCTAGTGATAACATCTCATTCTCTGCCCCGTTGCTCTTATTCTTGCGTTTGTTGGGCTCCAGACTGGGAGGTGGGGTCTGGGATGCGCTGGGCGGTTTCTTCTTAGCCAAGAGCTTCCGCTGCCTTTCTATGTCTTCTCTCTGAGAGTTCACCCTCTCCTGCTGCTGATTAGGTTCTGAAAGGCATAGCCATCACTCCACTGCTCGGTGAAAGAGGCACCGTGTCGTACTGTAGTGAAATGGCCCAACCGCAGCCGGTCCTGCATACTCTTATCCCTACACGCCATCTTCTCCTGCTTCGACTTCTCGATGAGCAGCTTCTTACTCATGGTCACACACTTGTTGAGGCGTTCTTTACAGCGCTCCAGCATTCTCTGCTGCTCATCAATCTGTCTGCGCAAGTCACAGTTCACCCTGAGCAGATCATCAATACGCCCCTCTTTCTTCTCTAGGTCTGAACTCTTACTGCTTTCCAACGCTGCCAACTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU407964 lncRNA upstream 80650 1110288 ~ 1111113 (+) True G296660
TU407948 lncRNA upstream 138194 965442 ~ 1053569 (+) False G296645
TU407945 lncRNA upstream 214418 965442 ~ 977345 (+) True G296645
TU407949 lncRNA upstream 260167 928770 ~ 931596 (+) True G296646
TU407939 lncRNA upstream 272260 848130 ~ 919503 (+) True G296640
TU408096 lncRNA downstream 26607 1227395 ~ 1230550 (+) True G296754
TU408112 lncRNA downstream 86746 1287534 ~ 1290420 (+) True LOC103044283
TU408110 lncRNA downstream 95457 1296245 ~ 1300826 (+) True G296768
TU408144 lncRNA downstream 173045 1373833 ~ 1375344 (+) True G296791
TU408173 lncRNA downstream 294430 1495218 ~ 1495445 (+) True G296812
XM_022665048.1 mRNA upstream 115208 1036346 ~ 1076555 (+) True rnd2
XM_015603209.2 mRNA upstream 227324 961281 ~ 964439 (+) True LOC103035075
XM_022665007.1 mRNA upstream 233332 949304 ~ 958431 (+) True LOC103032830
XM_022665006.1 mRNA upstream 233332 949339 ~ 958431 (+) False LOC103032830
XM_022665061.1 mRNA upstream 267477 911459 ~ 924286 (+) True atxn7l3
XM_007239306.3 mRNA downstream 86728 1287516 ~ 1288493 (+) False LOC103044283
XM_022664983.1 mRNA downstream 133552 1334340 ~ 1350920 (+) False LOC103044572
XM_022664982.1 mRNA downstream 133556 1334344 ~ 1350920 (+) True LOC103044572
XM_022665066.1 mRNA downstream 644192 1844980 ~ 2121494 (+) True LOC103028117
XM_022665111.1 mRNA downstream 1348362 2549150 ~ 2688790 (+) True LOC111191060
TU407749 other upstream 1150872 36851 ~ 40891 (+) False LOC103026352
TU408143 other downstream 158324 1359112 ~ 1361935 (+) True G296790
XR_002649344.1 other downstream 1473960 2674748 ~ 2678277 (+) True LOC111191061
TU408827 other downstream 2349556 3550344 ~ 3559451 (+) False LOC103030733
XR_002649321.1 other downstream 3052228 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 3219209 4419997 ~ 4434071 (+) False znf653

Expression Profile