RNA id: TU408246


Basic Information

Item Value
RNA id TU408246
length 381
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G296870
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1729109 ~ 1729489 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgacatgatctgcagtaactcctaaagaagaacacagtaactgctcagtcattagtaatgggttaccatgtgctgctgttaactcccgaaaaaagaagacagggaccccttattaattatctatgaagaacacagggatgcctagttcgttatctaacacaaatatttattcatttaaacatgatttcccccagaataaggatgtTGGACACAacctacagtaaagctgtatgtgagccatcacttctactgagcacatctccaggaggactgaagaagagcacaggtttagaataaacacctgtaacacactcacagaatattacaaaaatgggggttaagcagactactgcacatttcagtgtgtctaacatttgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408241 lncRNA downstream 20089 1708487 ~ 1709020 (-) True G296865
TU408237 lncRNA downstream 66045 1662819 ~ 1663064 (-) True G296861
TU408236 lncRNA downstream 71142 1657598 ~ 1657967 (-) True G296860
TU408206 lncRNA downstream 178503 1550294 ~ 1550606 (-) True G296832
TU408171 lncRNA downstream 249169 1471553 ~ 1479940 (-) True G296810
TU408248 lncRNA upstream 13318 1742807 ~ 1743104 (-) True G296872
TU408261 lncRNA upstream 45728 1775217 ~ 1813079 (-) True G296884
TU408264 lncRNA upstream 63030 1792519 ~ 1795770 (-) True G296887
TU408265 lncRNA upstream 63030 1792519 ~ 1795770 (-) False G296887
TU408266 lncRNA upstream 63030 1792519 ~ 1795770 (-) False G296887
XM_022665087.1 mRNA downstream 167709 1553406 ~ 1561400 (-) True LOC111191055
XM_022665070.1 mRNA downstream 183172 1497029 ~ 1545937 (-) True LOC103045206
XM_022664984.1 mRNA downstream 235236 1393162 ~ 1493873 (-) True LOC103044891
XM_022664987.1 mRNA downstream 340401 1373381 ~ 1388708 (-) True LOC107197178
XM_022664986.1 mRNA downstream 343345 1371515 ~ 1385764 (-) False LOC107197178
XM_022665064.1 mRNA upstream 116424 1845913 ~ 1857822 (-) False LOC111191047
XM_022665063.1 mRNA upstream 116424 1845913 ~ 1857822 (-) False LOC111191047
XM_022665065.1 mRNA upstream 116424 1845913 ~ 1849849 (-) True LOC111191047
XM_022664972.1 mRNA upstream 547877 2277366 ~ 2281361 (-) True LOC111191030
XM_022665077.1 mRNA upstream 760348 2489837 ~ 2493775 (-) True mfsd6l
XR_002649323.1 other downstream 340401 1373381 ~ 1388708 (-) False LOC107197178
TU408330 other upstream 116424 1845913 ~ 1846761 (-) False LOC111191047
trnac-gca_40 other upstream 281918 2011407 ~ 2011478 (-) True trnac-gca_40
trnas-gcu_8 other upstream 282238 2011727 ~ 2011798 (-) True trnas-gcu_8
trnay-gua_55 other upstream 282451 2011940 ~ 2012011 (-) True trnay-gua_55
trnat-cgu_5 other upstream 551490 2280979 ~ 2281051 (-) True trnat-cgu_5

Expression Profile