RNA id: TU408264


Basic Information

Item Value
RNA id TU408264
length 380
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G296887
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1792519 ~ 1795770 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taagctaaactaaacagataataacaaaacaaggtaagggaatatatacaaaggaataatacgtaaatatatacaaaataaacaaagaaacaaacaagaactaaacgtgactagaaatatacaagaaataaagagaactagaaataaacaagaaacaagcagAGCGTGACGAAACCGTGAATAAACAATAGctaacgtggcgagacaaaacgacagaggaaggtgcaaagaccgacagcaaacatagactaacaattactatttatactaaacatgaaacaaggaacacctggggaaacaggtaacaaggggcggagctacaaattacacacacgtaatggaaaatAACAGTGGAAACACCGGGGAAACAGAGGGAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408248 lncRNA downstream 49415 1742807 ~ 1743104 (-) True G296872
TU408246 lncRNA downstream 63030 1729109 ~ 1729489 (-) True G296870
TU408241 lncRNA downstream 83499 1708487 ~ 1709020 (-) True G296865
TU408237 lncRNA downstream 129455 1662819 ~ 1663064 (-) True G296861
TU408236 lncRNA downstream 134552 1657598 ~ 1657967 (-) True G296860
XR_454067.3 lncRNA upstream 102106 1897876 ~ 1909405 (-) True LOC103031477
TU408344 lncRNA upstream 180454 1976224 ~ 1978090 (-) True G296960
TU408352 lncRNA upstream 226007 2021777 ~ 2022157 (-) True G296967
TU408356 lncRNA upstream 326651 2122421 ~ 2134425 (-) True G296970
TU408359 lncRNA upstream 342943 2138713 ~ 2138920 (-) True G296972
XM_022665087.1 mRNA downstream 231119 1553406 ~ 1561400 (-) True LOC111191055
XM_022665070.1 mRNA downstream 246582 1497029 ~ 1545937 (-) True LOC103045206
XM_022664984.1 mRNA downstream 298646 1393162 ~ 1493873 (-) True LOC103044891
XM_022664987.1 mRNA downstream 403811 1373381 ~ 1388708 (-) True LOC107197178
XM_022664986.1 mRNA downstream 406755 1371515 ~ 1385764 (-) False LOC107197178
XM_022665064.1 mRNA upstream 50143 1845913 ~ 1857822 (-) False LOC111191047
XM_022665063.1 mRNA upstream 50143 1845913 ~ 1857822 (-) False LOC111191047
XM_022665065.1 mRNA upstream 50143 1845913 ~ 1849849 (-) True LOC111191047
XM_022664972.1 mRNA upstream 481596 2277366 ~ 2281361 (-) True LOC111191030
XM_022665077.1 mRNA upstream 694067 2489837 ~ 2493775 (-) True mfsd6l
XR_002649323.1 other downstream 403811 1373381 ~ 1388708 (-) False LOC107197178
TU408330 other upstream 50143 1845913 ~ 1846761 (-) False LOC111191047
trnac-gca_40 other upstream 215637 2011407 ~ 2011478 (-) True trnac-gca_40
trnas-gcu_8 other upstream 215957 2011727 ~ 2011798 (-) True trnas-gcu_8
trnay-gua_55 other upstream 216170 2011940 ~ 2012011 (-) True trnay-gua_55
trnat-cgu_5 other upstream 485209 2280979 ~ 2281051 (-) True trnat-cgu_5

Expression Profile