RNA id: XM_022665064.1


Basic Information

Item Value
RNA id XM_022665064.1
length 1925
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC111191047
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1845913 ~ 1857822 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACGTCCCGTCCTGCCCCTCCCTGCCCCTCCCCGCCACGCCCTGGACACCCGCCACACCATTTCCCTCCCGCTGAAAGAGGAAAAGTACTCAGCCGAAAgaaataattctgttctgtttcaTGGATACATTTGTGAAGGAGAAACTGAAAGAGTGGAAACTGGACTCTCTGATTCCCAGGTTTGAGCTTGAAGAAATCGACAAGGAGAGTTTTATATTACTGGATGATGCTTCCATTGCGGCGCTAGTTCCAGTAATTGGACCCAGACTGAAACTGAGGTCACACCTCAGAAAACTAACCGAGtCTTCAAAGGATCCTCAGCATGAGCTGGTTGAGTATGGCCCTACAGCAGGACCATCAATGGACCAGCAGCATGAGGCCATGTCTTCAGGACAAGGAGAattgtttAAAATTAGGGAGGCCCTCAACAAAACACCAGATGGTAGAGACATAGTGTGCAGTCTTGACACAGAACAGTGCCTCTCGCTTAAGCAGCGGAGGGCTATGGTTCGAATCCTAGTGTCATATCTCATCGAGCGGTTTGGAGAGACTCCATCATcggaaacaaagaaaaacatggccTCTTCTTTGGTGACTGAATTTCCATGTCTAAAAGATCAGCATGGGAATGGCAATgaagcATGGTATAGTCCAGGTCGAAACCACAGACCAGCAACTGGCTTCATTGAAGAACGTTTAAGAAATGTACGGAAGAGGCTCCGTAGTGGAACGAGCAGACCTAGCCATGTGGAGAACAACGTAATCAGTAGTTTGGTTTTGCCAGagaCTGAAATATCTGATGAGAGGGCAGAGGCAATGATGGAGTGGCTAAAAAATAACATCAGACCCCTAAGCCAAGTTGAAGAATACATGAAGCAGACAGCCATCCATAGAGCTAAGTGGATAAGGGAGCATGGGTCAAAGACCATGGAAGAGATCAAGAGAGAGTATCCACGTCTGCTGGATACACCAGGAATGatTGCTCAGGACTTTTCCATTTTACACCCAGCCTGTGCCGGGAAACTTGCAGAAAAGTGGATGCCTGTTTTCAAAGACAAAATTTTACGATTTGCTAGCCAGGAGAAGCAAGCTTCTGGAATTATTTCCAAAGTGGATTCTGTGTGTACAGATGCACAAGGTGATATGGCTTTGAAATTATTGCCAGTAATCCTTCCAGCTTCTGTCTATAGGATTGGTCGGAAGAGCTTCCGTCCAAGCtgtgaagaaacaaaaaaatcatttattgatCTGCAACCAGTTGGGACTAATATGGTGGAATTCCTGTCCGAGGCACAAGGCACAAGACCTTACCCGTTTGTTTTGGCTCTAGGTGATGATCAGCGTTGCTCACAATCATTTGTGGTCATCAATGGGGAGGCCATGGAGCAGAGTACACTTATTGGAGCTGTTGATGTTTGTTTTAAAGCATACTATGTCTTTGACATAAACTACCCCAGACAGTGTTCTTCAGTGTGGGAGTTTTTACAGACTGTCGTCTATGAACTGCCAGGTCAGGAATCTCCCTCTGTAAGACTTTTGCGggcatttattttttccacccaGTAGTGAAGCTCGTTTGCAGCTCCTTTGTATATTATacatgtttgtaaaaaaaaaatgttgttactgagatgtttttgttgatgtaaaatagaGAACGGTTGTTGTTAATTAGAAATGTTTATGAAATGAAGAATAGTTGATGATGAGAAATGTTGATGAAATGGAGAATGGTTGATGTTAATATATGTTGATGAGAAATGATGAAATGTTGATGAAACGGAGAATGGTTGTTGGTGAGAAATAATGTTGAAATGATGTTAATGAAATGGTTATTGAGATGTTGTTGAGAAGAAATGGTGTTATGGTTTTGAGAAATTACTTTGttgaaaaattacaaaaacaataaagcaTTTTATTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408261 lncRNA downstream 32834 1775217 ~ 1813079 (-) True G296884
TU408264 lncRNA downstream 50143 1792519 ~ 1795770 (-) True G296887
TU408265 lncRNA downstream 50143 1792519 ~ 1795770 (-) False G296887
TU408266 lncRNA downstream 50143 1792519 ~ 1795770 (-) False G296887
TU408248 lncRNA downstream 102809 1742807 ~ 1743104 (-) True G296872
XR_454067.3 lncRNA upstream 40054 1897876 ~ 1909405 (-) True LOC103031477
TU408344 lncRNA upstream 118402 1976224 ~ 1978090 (-) True G296960
TU408352 lncRNA upstream 163955 2021777 ~ 2022157 (-) True G296967
TU408356 lncRNA upstream 264599 2122421 ~ 2134425 (-) True G296970
TU408359 lncRNA upstream 280891 2138713 ~ 2138920 (-) True G296972
XM_022665087.1 mRNA downstream 284513 1553406 ~ 1561400 (-) True LOC111191055
XM_022665070.1 mRNA downstream 299976 1497029 ~ 1545937 (-) True LOC103045206
XM_022664984.1 mRNA downstream 352040 1393162 ~ 1493873 (-) True LOC103044891
XM_022664985.1 mRNA downstream 457204 1371515 ~ 1388709 (-) False LOC107197178
XM_022664972.1 mRNA upstream 419544 2277366 ~ 2281361 (-) True LOC111191030
XM_022665077.1 mRNA upstream 632015 2489837 ~ 2493775 (-) True mfsd6l
XM_022665102.1 mRNA upstream 639393 2497215 ~ 2531502 (-) True LOC103037146
XM_022664973.1 mRNA upstream 1086028 2943850 ~ 2945114 (-) True LOC111191031
XM_022665109.1 mRNA upstream 1188408 3046230 ~ 3060717 (-) True LOC103026382
XR_002649323.1 other downstream 457205 1373381 ~ 1388708 (-) False LOC107197178
trnac-gca_40 other upstream 153585 2011407 ~ 2011478 (-) True trnac-gca_40
trnas-gcu_8 other upstream 153905 2011727 ~ 2011798 (-) True trnas-gcu_8
trnay-gua_55 other upstream 154118 2011940 ~ 2012011 (-) True trnay-gua_55
trnat-cgu_5 other upstream 423157 2280979 ~ 2281051 (-) True trnat-cgu_5
trnar-ucg_44 other upstream 423318 2281140 ~ 2281212 (-) True trnar-ucg_44

Expression Profile