RNA id: TU408394


Basic Information

Item Value
RNA id TU408394
length 396
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G297005
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2504459 ~ 2504854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATTGTAATAGGCCCTGCCCAGTCTGCCCAAAGTGCTATCATCACCCATGACAACGATACGAGCTGTGAAGGTCTTCTCCTCCTTCGGCAGGGAGCTTCCTCCTCCAGCCGTTCCTCCAATCTCCTTAATGGCCTCCATCATTAGAGTCATTCTGTTCCCAGCCCTAGGCCACCGTACACACGCCCTCCTGTAGAACTGCGACATTCTCTTCTGTTCCAGCACCTCCGACTCAGCAGGGGGCTCCACCATCAGAGACGCCAGCTCGCTTAGAGGCAGGTCTCCCTCTATGCCGCTGTCTACTGACATGGTGGAGATACAGGAAGCTCGTTTGGCTGTATCATCCTCATCTAAGAATGTGGAGCTCTGTTCCTCAGGGTTTACCATCAGAGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408392 lncRNA upstream 8658 2495089 ~ 2495801 (+) True G297003
TU408386 lncRNA upstream 16815 2486742 ~ 2487644 (+) True G296999
TU408376 lncRNA upstream 232256 2271937 ~ 2272203 (+) True G296989
TU408373 lncRNA upstream 275727 2228293 ~ 2228732 (+) True G296986
TU408372 lncRNA upstream 276255 2227649 ~ 2228204 (+) True G296985
TU408406 lncRNA downstream 144561 2649415 ~ 2651959 (+) True G297016
TU408407 lncRNA downstream 144561 2649415 ~ 2651959 (+) False G297016
TU408411 lncRNA downstream 149918 2654772 ~ 2659221 (+) True G297018
TU408415 lncRNA downstream 163818 2668672 ~ 2669862 (+) True G297021
TU408416 lncRNA downstream 163818 2668672 ~ 2669862 (+) False G297021
XM_022665066.1 mRNA upstream 382965 1844980 ~ 2121494 (+) True LOC103028117
XM_022664983.1 mRNA upstream 1153539 1334340 ~ 1350920 (+) False LOC103044572
XM_022664982.1 mRNA upstream 1153539 1334344 ~ 1350920 (+) True LOC103044572
XM_007239306.3 mRNA upstream 1215966 1287516 ~ 1288493 (+) False LOC103044283
XM_022665048.1 mRNA upstream 1427904 1036346 ~ 1076555 (+) True rnd2
XM_022665111.1 mRNA downstream 44296 2549150 ~ 2688790 (+) True LOC111191060
XM_022665042.1 mRNA downstream 263810 2768664 ~ 2925185 (+) True LOC111191042
XM_022665043.1 mRNA downstream 263810 2768664 ~ 2925185 (+) False LOC111191042
XM_022664959.1 mRNA downstream 564783 3069637 ~ 3148603 (+) True LOC111191028
XM_022665033.1 mRNA downstream 660195 3165049 ~ 3216189 (+) True LOC103026062
TU408143 other upstream 1142524 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 1303671 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 2463568 36851 ~ 40891 (+) False LOC103026352
XR_002649344.1 other downstream 169894 2674748 ~ 2678277 (+) True LOC111191061
TU408827 other downstream 1045490 3550344 ~ 3559451 (+) False LOC103030733
XR_002649321.1 other downstream 1748162 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 1915143 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 2145789 4650643 ~ 4675519 (+) False LOC111191039

Expression Profile