RNA id: TU408407



Basic Information


Item Value
RNA id TU408407
length 706
lncRNA type intronic
GC content 0.37
exon number 2
gene id G297016
representative False

Chromosome Information


Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2649415 ~ 2651959 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aaaatatagccgcaagcggcaatcatcgggttcaagcaccaacttgcacaatggtgcctactggagcattgaatggtgatgtgtaagaaggtctaatatgattggagatgccctgtcacatttagaaattatcaagtttttcacctgttattaatgttgagcagaggcctttcaacctgatcagtgcttaaattcacatgtaaatctagtgaactttgtaggatattcattaagtgagttagaactagtcaaaaggtgtctacatgttattggtattgatcaggtggcttcaaccagaatgttcacaaagtggtattcagattgacctttgaacctttgcagaacaagctgaaatgtttgaccaaacaagtttaaattaacacaaaggagtgaatgttctgatatgacatgtaattacgaagttattataaatctagttctgaattaaatggcgcttcatcaagcaccaactagcacaatggtgcctactagagcataggatggtgatgtgtaagaaggtctaacacaattggagacattctgtcacatttagaaatgatcaaaagtctttcacctgttattaatgttgagaagaggcacaaaggagtgaatgttctgatatgacatgtaatgtcaagttattcttaatctagttctgtattaaatggcgcttcatcagagtgatattgtacagaggtctttaaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU408394 lncRNA upstream 144561 2504459 ~ 2504854 (+) True G297005
TU408392 lncRNA upstream 153614 2495089 ~ 2495801 (+) True G297003
TU408386 lncRNA upstream 161771 2486742 ~ 2487644 (+) True G296999
TU408376 lncRNA upstream 377212 2271937 ~ 2272203 (+) True G296989
TU408373 lncRNA upstream 420683 2228293 ~ 2228732 (+) True G296986
TU408411 lncRNA downstream 2813 2654772 ~ 2659221 (+) True G297018
TU408415 lncRNA downstream 16713 2668672 ~ 2669862 (+) True G297021
TU408416 lncRNA downstream 16713 2668672 ~ 2669862 (+) False G297021
TU408421 lncRNA downstream 19741 2671700 ~ 2673946 (+) True G297022
TU408427 lncRNA downstream 23616 2675575 ~ 2677960 (+) True G297023
XM_022665066.1 mRNA upstream 527921 1844980 ~ 2121494 (+) True LOC103028117
XM_022664983.1 mRNA upstream 1298495 1334340 ~ 1350920 (+) False LOC103044572
XM_022664982.1 mRNA upstream 1298495 1334344 ~ 1350920 (+) True LOC103044572
XM_007239306.3 mRNA upstream 1360922 1287516 ~ 1288493 (+) False LOC103044283
XM_022665048.1 mRNA upstream 1572860 1036346 ~ 1076555 (+) True rnd2
XM_022665042.1 mRNA downstream 116705 2768664 ~ 2925185 (+) True LOC111191042
XM_022665043.1 mRNA downstream 116705 2768664 ~ 2925185 (+) False LOC111191042
XM_022664959.1 mRNA downstream 417678 3069637 ~ 3148603 (+) True LOC111191028
XM_022665033.1 mRNA downstream 513090 3165049 ~ 3216189 (+) True LOC103026062
XM_022665037.1 mRNA downstream 513090 3165049 ~ 3216189 (+) False LOC103026062
TU408143 other upstream 1287480 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 1448627 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 2608524 36851 ~ 40891 (+) False LOC103026352
XR_002649344.1 other downstream 22789 2674748 ~ 2678277 (+) True LOC111191061
TU408827 other downstream 898385 3550344 ~ 3559451 (+) False LOC103030733
XR_002649321.1 other downstream 1601057 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 1768038 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 1998684 4650643 ~ 4675519 (+) False LOC111191039