RNA id: TU408416


Basic Information

Item Value
RNA id TU408416
length 471
lncRNA type intronic
GC content 0.42
exon number 2
gene id G297021
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2668672 ~ 2669862 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttggccccgccccctgggggggtgtatgtctacttaaactgacagggtatctgagaatcatgtaatgatcaaaggactgaagtggtattagtgtcaggttaagcattcaaaagttacagctgttagagtaaatttgggtgtgccacggtaagattaatttgcatatggcggccatattgtttacaaatttcacaattttttcgataattattgaggttgggactctgctgagttgtttgacaccaaatatgacaggattggtcaatgaccctaggacaagttctcaaaagtaggttttgcatattatgctaaatagcaaaaaatctaagtgggcggagcttagtggttctattgacctttttgatttGCCATTAACCAAGGAATCATATAATGCAAGAATTTTTGCTCTAGCTATCAGGGCGTAGGAGTTACGAGGCCAAACGCGTTGACCTTCgccatagcgcccccttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408411 lncRNA upstream 9451 2654772 ~ 2659221 (+) True G297018
TU408406 lncRNA upstream 16713 2649415 ~ 2651959 (+) True G297016
TU408407 lncRNA upstream 16713 2649415 ~ 2651959 (+) False G297016
TU408394 lncRNA upstream 163818 2504459 ~ 2504854 (+) True G297005
TU408392 lncRNA upstream 172871 2495089 ~ 2495801 (+) True G297003
TU408421 lncRNA downstream 1838 2671700 ~ 2673946 (+) True G297022
TU408427 lncRNA downstream 5713 2675575 ~ 2677960 (+) True G297023
TU408428 lncRNA downstream 5713 2675575 ~ 2677960 (+) False G297023
TU408403 lncRNA downstream 22160 2692022 ~ 2692623 (+) True G297013
TU408489 lncRNA downstream 28848 2698710 ~ 2698926 (+) True G297040
XM_022665066.1 mRNA upstream 547178 1844980 ~ 2121494 (+) True LOC103028117
XM_022664983.1 mRNA upstream 1317752 1334340 ~ 1350920 (+) False LOC103044572
XM_022664982.1 mRNA upstream 1317752 1334344 ~ 1350920 (+) True LOC103044572
XM_007239306.3 mRNA upstream 1380179 1287516 ~ 1288493 (+) False LOC103044283
XM_022665048.1 mRNA upstream 1592117 1036346 ~ 1076555 (+) True rnd2
XM_022665042.1 mRNA downstream 98802 2768664 ~ 2925185 (+) True LOC111191042
XM_022665043.1 mRNA downstream 98802 2768664 ~ 2925185 (+) False LOC111191042
XM_022664959.1 mRNA downstream 399775 3069637 ~ 3148603 (+) True LOC111191028
XM_022665033.1 mRNA downstream 495187 3165049 ~ 3216189 (+) True LOC103026062
XM_022665037.1 mRNA downstream 495187 3165049 ~ 3216189 (+) False LOC103026062
TU408143 other upstream 1306737 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 1467884 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 2627781 36851 ~ 40891 (+) False LOC103026352
XR_002649344.1 other downstream 4886 2674748 ~ 2678277 (+) True LOC111191061
TU408827 other downstream 880482 3550344 ~ 3559451 (+) False LOC103030733
XR_002649321.1 other downstream 1583154 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 1750135 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 1980781 4650643 ~ 4675519 (+) False LOC111191039