RNA id: TU408827


Basic Information

Item Value
RNA id TU408827
length 991
RNA type TUCP
GC content 0.58
exon number 2
gene id LOC103030733
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3550327 ~ 3640614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAGCAGCTCAGCAGCACACCGGGTCCATCCTGCGCTCCTCCAGAACCAGCAGAACCATGAGGGAGAACCTCCAGCCCAGAGATCCTCACTTTACCCCCACAGGAACTCACTTTCCTCTACAATGCGGAGTAAAACTGAGGGTTTAATCAGATCTCAGCCCTGGATTACTGTCTTTTACTGCTGTTCTGCTCTTCTGGATCTGTGTGATGATCTTCTTCAGGTGGAGGAATCAGCTTAACCAGGACTTAACCAGGATACCTCTCAAATGTTCTGCCCGCACTCCCTCAGTCTGGAGACCCAGACCAGCAACACCTCGGCCCTGACTGCCGCGGCGCCCGTCTCCAACCAGACGTCTGGGCCGGTCGGAATGGACCCAAAGGGCAACCAGACAAAGTCCGAGGATGCCACGTCTGCAATGAATCCCACGGCCGCTGGGCTCTCCATGACTCTGGGTGTTCTGTCCAACATCATCGCACTCTTCATCCTGTCCAAGGCCTACGCCCGCCTGCGCCGGCGCTCCAAGGCCACCTTCCTGCTCTTCGCCAGCTCGCTGGTGGCCACGGACTTCGCCGGACACATCATCCCAGGTGCTCTGGTGCTGCACCTGTACTCCAACGGCGTCAGCCAGGAGCGTAAAGACTCAGACGCCTGCTGCCTGCTTCTGGGTGGCAGCATGGTGTTCTTCGGCCTGTGCCCTCTGTTCCTGGGTTGCGCCATGGCGGCAGAGCGATGCCTTGGGGTTACCCGTCCACTCCTCCACGCCAGACTCGTTTCCACCACCAGAACTAAGATGGCAGTGGTGACGATCTGGCTGGTAGCGCTGGTGGTGGCATTGCTGCCCATTAGTAACCTTGGAGAATACACATATCAGTACCCGGGGACCTGGTGCTTCATCCGGGTGCTGAGGAGCTCGAAAGCGACAGACGTGGTgtttgtgctgctgttctcTGTGCTGGGGCTCACCTCGCTCGCTATGTCACTGGTGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408751 lncRNA upstream 138259 3411256 ~ 3412085 (+) True G297218
TU408750 lncRNA upstream 139532 3348742 ~ 3410812 (+) True G297217
TU408739 lncRNA upstream 174610 3346094 ~ 3375734 (+) True G297214
TU408716 lncRNA upstream 237826 3311910 ~ 3312518 (+) False G297203
TU408717 lncRNA upstream 237826 3311910 ~ 3312518 (+) False G297203
TU408833 lncRNA downstream 6971 3566422 ~ 3640614 (+) False LOC103030733
TU408832 lncRNA downstream 7424 3566875 ~ 3584353 (+) False LOC103030733
TU408849 lncRNA downstream 101792 3661243 ~ 3664579 (+) True G297303
TU408865 lncRNA downstream 134247 3693698 ~ 3697530 (+) False G297318
TU408866 lncRNA downstream 134247 3693698 ~ 3697530 (+) True G297318
XM_022665093.1 mRNA upstream 146781 3362434 ~ 3403563 (+) False LOC103038127
XM_022665092.1 mRNA upstream 146781 3362434 ~ 3403563 (+) False LOC103038127
XM_022665090.1 mRNA upstream 146781 3362435 ~ 3403563 (+) True LOC103038127
XM_022665091.1 mRNA upstream 146781 3362435 ~ 3403563 (+) False LOC103038127
XM_022665079.1 mRNA upstream 193104 3346445 ~ 3357240 (+) True LOC111191052
XM_007241956.3 mRNA downstream 15182 3574633 ~ 3595371 (+) False ilf3
XM_007241958.3 mRNA downstream 15182 3574633 ~ 3595371 (+) False ilf3
XM_007241959.3 mRNA downstream 15182 3574633 ~ 3591403 (+) False ilf3
XM_015603960.2 mRNA downstream 15182 3574633 ~ 3591403 (+) False ilf3
XM_007241957.3 mRNA downstream 15274 3574725 ~ 3595371 (+) True ilf3
XR_002649344.1 other upstream 872067 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2188409 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 2349556 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 3509453 36851 ~ 40891 (+) False LOC103026352
XR_002649321.1 other downstream 693565 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 860546 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 1091192 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 2143103 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile