RNA id: TU409019


Basic Information

Item Value
RNA id TU409019
length 238
lncRNA type intronic
GC content 0.40
exon number 2
gene id G297407
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4090911 ~ 4091300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTGCGGTAAAGTGatttagaatgaggtagagtgaggtagagtgatttaGAAtcaggtagagtgtggtaaagtgatttagaatgaggtagagtgaggtagagtgatttaGAATCGGGTAGAGTGCGGTAAAGTGATTTAGAATCAGGTAGAGTGCGGTAAAGTGatttagaatgaggtagagtgaggtagagtgatttaGAATCAGgtagagtgaggtagagtgatttagaatgagg

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408998 lncRNA upstream 65551 4025049 ~ 4025360 (+) True G297398
TU408988 lncRNA upstream 67280 4021560 ~ 4023631 (+) True G297392
TU408971 lncRNA upstream 138416 3947233 ~ 3952495 (+) True G297387
TU409006 lncRNA downstream 36221 4127521 ~ 4166562 (+) True G297405
TU409152 lncRNA downstream 123995 4215295 ~ 4275823 (+) True G297497
TU409158 lncRNA downstream 162906 4254206 ~ 4299447 (+) False LOC103041102
TU409157 lncRNA downstream 201057 4292357 ~ 4295607 (+) False LOC103041102
TU409159 lncRNA downstream 201057 4292357 ~ 4299447 (+) True LOC103041102
XM_022664970.1 mRNA upstream 265271 3776523 ~ 3825640 (+) True LOC103046751
XM_022664969.1 mRNA upstream 324424 3717090 ~ 3766487 (+) False LOC103025262
XM_022664968.1 mRNA upstream 329164 3704804 ~ 3761747 (+) True LOC103025262
XM_022664967.1 mRNA upstream 329164 3717089 ~ 3761747 (+) False LOC103025262
XM_022665062.1 mRNA upstream 439576 3645713 ~ 3651335 (+) True LOC111191046
XM_007238232.3 mRNA downstream 31220 4122520 ~ 4159462 (+) True LOC103038737
XM_022664963.1 mRNA downstream 161716 4253016 ~ 4295186 (+) False LOC103041102
XM_022665057.1 mRNA downstream 231811 4323111 ~ 4346597 (+) True cnn1
XM_022665078.1 mRNA downstream 265687 4356987 ~ 4363604 (+) True tmem205
XM_022665106.1 mRNA downstream 276418 4367718 ~ 4392866 (+) True LOC103038197
TU408827 other upstream 531460 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1412634 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2728976 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 2890123 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 4050020 36851 ~ 40891 (+) False LOC103026352
XR_002649321.1 other downstream 161716 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 328697 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 559343 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1611254 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile