RNA id: TU409211


Basic Information

Item Value
RNA id TU409211
length 281
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G297530
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4431333 ~ 4435857 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccttgctagaatctggagagtcctgacatttaaaacgaggcattaataacttaaaaagtgcagaagaagcttattaaaaaccacaCTGATTACATCCCATAATATGAGCTTTCACATAGCTTGCCTCCTGGCGCTGGCTGCTACACtttgcagagtctatgtatatatatgtctgtcattatcagtacagtgatggcggcgctcggcgctgaagctagtgttatgggatgtaaaaattgtttttaataagcttcttctgcactttttaagttattaatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409209 lncRNA upstream 12564 4417976 ~ 4418769 (+) True G297529
TU409188 lncRNA upstream 75369 4352653 ~ 4355964 (+) True G297516
TU409158 lncRNA upstream 131886 4254206 ~ 4299447 (+) False LOC103041102
TU409212 lncRNA downstream 209 4436066 ~ 4436423 (+) True G297531
XR_002649320.1 lncRNA downstream 4487 4440344 ~ 4443094 (+) True LOC111191027
XR_002649336.1 lncRNA downstream 22598 4458455 ~ 4475326 (+) False LOC111191048
XR_002649335.1 lncRNA downstream 36181 4472038 ~ 4475326 (+) False LOC111191048
TU409220 lncRNA downstream 36243 4472100 ~ 4477769 (+) True LOC111191048
XM_022665107.1 mRNA upstream 16642 4401640 ~ 4414691 (+) True epor
XM_022665106.1 mRNA upstream 38467 4367718 ~ 4392866 (+) True LOC103038197
XM_022665104.1 mRNA upstream 38467 4377110 ~ 4392866 (+) False LOC103038197
XM_022665078.1 mRNA upstream 67729 4356987 ~ 4363604 (+) True tmem205
XM_022665057.1 mRNA upstream 84736 4323111 ~ 4346597 (+) True cnn1
XM_022665080.1 mRNA downstream 51047 4486904 ~ 4508485 (+) True LOC103021497
XM_022664991.1 mRNA downstream 75552 4511409 ~ 4598805 (+) True LOC111191035
XM_022665002.1 mRNA downstream 273607 4709464 ~ 4711739 (+) True LOC111191037
XM_022665071.1 mRNA downstream 290830 4726687 ~ 4732562 (+) True LOC103025123
XM_022665110.1 mRNA downstream 298811 4734668 ~ 4770755 (+) True xpo6
XR_002649321.1 other upstream 136147 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 871882 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1753056 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 3069398 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 3230545 1191763 ~ 1200788 (+) True G296679
TU409249 other downstream 214786 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1266697 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile