RNA id: TU409212


Basic Information

Item Value
RNA id TU409212
length 358
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G297531
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4436066 ~ 4436423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcatgttttactacaacaaaagtccattttacactgaagTTCTTATTCCCtgagtttattggctggttgaaaagcaaagaaaaaatctGATCAATTTTCTGACTTCTATAAACTctctaaaactgtttttttctataatccAGTTTCCCCAGTGACTGTGCTGACTGGATTACTGTCTATTctgatgttctgcagtaatcagattatgaagtccatgtaaacacactcatttttttctgatttatttttgttttgtcttcttGTTGTGCTGGACACAGCTTCCATTAATAACAGTTATGTTGGATTATTTactgtctgtttttctcttgtgtttttgaatgaatgactgtttacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409211 lncRNA upstream 209 4431333 ~ 4435857 (+) True G297530
TU409209 lncRNA upstream 17297 4417976 ~ 4418769 (+) True G297529
TU409188 lncRNA upstream 80102 4352653 ~ 4355964 (+) True G297516
TU409159 lncRNA upstream 136619 4292357 ~ 4299447 (+) True LOC103041102
TU409161 lncRNA upstream 136619 4292357 ~ 4299447 (+) False LOC103041102
XR_002649320.1 lncRNA downstream 3921 4440344 ~ 4443094 (+) True LOC111191027
XR_002649336.1 lncRNA downstream 22032 4458455 ~ 4475326 (+) False LOC111191048
XR_002649335.1 lncRNA downstream 35615 4472038 ~ 4475326 (+) False LOC111191048
TU409220 lncRNA downstream 35677 4472100 ~ 4477769 (+) True LOC111191048
TU409228 lncRNA downstream 44462 4480885 ~ 4481291 (+) True G297544
XM_022664995.1 mRNA upstream 1995 4419997 ~ 4434071 (+) True znf653
XM_022664996.1 mRNA upstream 1995 4419997 ~ 4434071 (+) False znf653
XM_022664997.1 mRNA upstream 1995 4419997 ~ 4434071 (+) False znf653
XM_022665107.1 mRNA upstream 21375 4401640 ~ 4414691 (+) True epor
XM_022665106.1 mRNA upstream 43200 4367718 ~ 4392866 (+) True LOC103038197
XM_022665080.1 mRNA downstream 50481 4486904 ~ 4508485 (+) True LOC103021497
XM_022664991.1 mRNA downstream 74986 4511409 ~ 4598805 (+) True LOC111191035
XM_022665002.1 mRNA downstream 273041 4709464 ~ 4711739 (+) True LOC111191037
XM_022665071.1 mRNA downstream 290264 4726687 ~ 4732562 (+) True LOC103025123
XM_022665110.1 mRNA downstream 298245 4734668 ~ 4770755 (+) True xpo6
XR_002649326.1 other upstream 1995 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 140880 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 876615 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1757789 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 3074131 1359112 ~ 1361935 (+) True G296790
TU409249 other downstream 214220 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1266131 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile