RNA id: TU409228


Basic Information

Item Value
RNA id TU409228
length 250
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G297544
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4480885 ~ 4481291 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagtgcgcatttctagcgccgaaaaacagggcaaaagagtctaaaagcagagagggtgcgcatttctagcacagaaaaatggggcaaagagtctaaaagcagagagggtgcgcatttctagcgcagaaaaatggggcaaaagagtctaaaagtggagagggtgcgcatttctagcgcagaaaaacggggcaaaagagtctaaaagcagagagggtgcgcatttctagcacagaaaaatggggcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409220 lncRNA upstream 3116 4472100 ~ 4477769 (+) True LOC111191048
XR_002649336.1 lncRNA upstream 5559 4458455 ~ 4475326 (+) False LOC111191048
XR_002649335.1 lncRNA upstream 5559 4472038 ~ 4475326 (+) False LOC111191048
XR_002649320.1 lncRNA upstream 37791 4440344 ~ 4443094 (+) True LOC111191027
TU409212 lncRNA upstream 44462 4436066 ~ 4436423 (+) True G297531
TU409234 lncRNA downstream 32975 4514266 ~ 4514806 (+) True G297549
TU409237 lncRNA downstream 47798 4529089 ~ 4530066 (+) True G297551
TU409236 lncRNA downstream 48274 4529565 ~ 4529887 (+) False G297551
TU409148 lncRNA downstream 102565 4583856 ~ 4665614 (+) True G297493
TU409147 lncRNA downstream 118398 4599689 ~ 4600615 (+) True G297492
XM_022664995.1 mRNA upstream 46814 4419997 ~ 4434071 (+) True znf653
XM_022664996.1 mRNA upstream 46814 4419997 ~ 4434071 (+) False znf653
XM_022664997.1 mRNA upstream 46814 4419997 ~ 4434071 (+) False znf653
XM_022665107.1 mRNA upstream 66194 4401640 ~ 4414691 (+) True epor
XM_022665104.1 mRNA upstream 88019 4377110 ~ 4392866 (+) False LOC103038197
XM_022665080.1 mRNA downstream 5613 4486904 ~ 4508485 (+) True LOC103021497
XM_022664991.1 mRNA downstream 30118 4511409 ~ 4598805 (+) True LOC111191035
XM_022665002.1 mRNA downstream 228173 4709464 ~ 4711739 (+) True LOC111191037
XM_022665071.1 mRNA downstream 245396 4726687 ~ 4732562 (+) True LOC103025123
XM_022665110.1 mRNA downstream 253377 4734668 ~ 4770755 (+) True xpo6
XR_002649326.1 other upstream 46814 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 185699 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 921434 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1802608 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 3118950 1359112 ~ 1361935 (+) True G296790
TU409249 other downstream 169352 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1221263 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile