RNA id: TU409234


Basic Information

Item Value
RNA id TU409234
length 438
lncRNA type intronic
GC content 0.43
exon number 2
gene id G297549
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4514266 ~ 4514806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctacctcccggccgctgcgctcctccaatgaacgtcacctcgctttaccaaacaaacattcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccttccactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctactaacacctctaactaactaccttctactaccagatcaggagcgtccttcactatctttaataaactcctgaagacagagctcttcaaagagtacttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaacacactaactacttctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409228 lncRNA upstream 32975 4480885 ~ 4481291 (+) True G297544
TU409220 lncRNA upstream 36497 4472100 ~ 4477769 (+) True LOC111191048
XR_002649336.1 lncRNA upstream 38940 4458455 ~ 4475326 (+) False LOC111191048
XR_002649335.1 lncRNA upstream 38940 4472038 ~ 4475326 (+) False LOC111191048
XR_002649320.1 lncRNA upstream 71172 4440344 ~ 4443094 (+) True LOC111191027
TU409237 lncRNA downstream 14283 4529089 ~ 4530066 (+) True G297551
TU409236 lncRNA downstream 14759 4529565 ~ 4529887 (+) False G297551
TU409148 lncRNA downstream 69050 4583856 ~ 4665614 (+) True G297493
TU409147 lncRNA downstream 84883 4599689 ~ 4600615 (+) True G297492
TU409140 lncRNA downstream 86543 4601349 ~ 4605869 (+) False G297490
XM_022665080.1 mRNA upstream 5781 4486904 ~ 4508485 (+) True LOC103021497
XM_022664995.1 mRNA upstream 80195 4419997 ~ 4434071 (+) True znf653
XM_022664996.1 mRNA upstream 80195 4419997 ~ 4434071 (+) False znf653
XM_022664997.1 mRNA upstream 80195 4419997 ~ 4434071 (+) False znf653
XM_022665107.1 mRNA upstream 99575 4401640 ~ 4414691 (+) True epor
XM_022665002.1 mRNA downstream 194658 4709464 ~ 4711739 (+) True LOC111191037
XM_022665071.1 mRNA downstream 211881 4726687 ~ 4732562 (+) True LOC103025123
XM_022665110.1 mRNA downstream 219862 4734668 ~ 4770755 (+) True xpo6
XM_007237548.3 mRNA downstream 258837 4773643 ~ 4789683 (+) True nme4
XM_022665015.1 mRNA downstream 262705 4777511 ~ 4789683 (+) False nme4
XR_002649326.1 other upstream 80195 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 219080 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 954815 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1835989 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 3152331 1359112 ~ 1361935 (+) True G296790
TU409249 other downstream 135837 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1187748 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile