RNA id: TU409251


Basic Information

Item Value
RNA id TU409251
length 1119
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G297561
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4654334 ~ 4658649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTATATACTAAACTATTTATGTACTATTTATGCTAATATATTAGcattatatagcaaatatattgttttaaagatCAATGACCTGAATATTCCGACATTTACATTGAAATATTACCTTTTTTCGTagaataaatactctaaataaataaaaatatatattaaatataaccaTTACTTTTACACAAAGTGAACAGATTCTTCttcaagtaaaaataatgagtaataTTGATTTTACTGAagatataaagtaaatataatgtaattagtGTGATGATTTTTAGCCAATTATCTTCAGTCAGATCAAAGcagtaaatgaataaacagggtTTGGGAcggtgtgtgtgtactgtaaacAGGCTTCTGTGCGAgtaggtcacacacacacacacacacacacacacacacacaccctagcacagacagagagagaggagaggagtcTGGAAAGAGTGTGGCGAGGAGAACCCAGCTGTTTcaacactgaacacactgaacacactgaacacactgctgctgctgctgctggaggaacCCTGCAGGGAGAGTGTCACTGTCTGAGAGACAGCCATCctacatacacacgcacacacacactctctctcacacactcacacgcaagacaagcctgtcacaataacgtTTTCATTTAAAAGATACTGTCCCAGAAAAAATGCGATCATTGATATTActgtcatttaaaaacattattacacccctgatataataataataataataataataatataatagcataattatattatatacacccCCTTTAAAGAGTAATGATAATATATTAGGAATAATCAGACATTAAAATGGGAATATAAatttctttatataaaatattctaaataacgAAAACAAATGTGACATACTGTCTCATTTATTCTCTTGTAGCTGAATACAATTAAAATCTCAAAACAGaatttagggtagtatagggagtaaagagtagtataggaaatatagggtagtatagggtagtatagagagtataggtaatatagagtactatagagagtatagggtagtatagGTAatattgggtagtatagggagtaaagagtagtataggaaatataggatagtatagagtagtgtagagagtatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409140 lncRNA upstream 51441 4601349 ~ 4605869 (+) False G297490
TU409142 lncRNA upstream 51441 4601349 ~ 4605869 (+) True G297490
TU409147 lncRNA upstream 56695 4599689 ~ 4600615 (+) True G297492
TU409237 lncRNA upstream 127244 4529089 ~ 4530066 (+) True G297551
TU409236 lncRNA upstream 127423 4529565 ~ 4529887 (+) False G297551
TU409261 lncRNA downstream 59130 4717779 ~ 4788076 (+) True G297571
TU409279 lncRNA downstream 137345 4795994 ~ 4802293 (+) False G297580
TU409280 lncRNA downstream 137345 4795994 ~ 4802293 (+) True G297580
XR_002649329.1 lncRNA downstream 143653 4802302 ~ 4804066 (+) False LOC111191040
XR_002649328.1 lncRNA downstream 143653 4802302 ~ 4804066 (+) False LOC111191040
XM_022664991.1 mRNA upstream 58505 4511409 ~ 4598805 (+) True LOC111191035
XM_022665080.1 mRNA upstream 148825 4486904 ~ 4508485 (+) True LOC103021497
XM_022664995.1 mRNA upstream 223239 4419997 ~ 4434071 (+) True znf653
XM_022665002.1 mRNA downstream 50815 4709464 ~ 4711739 (+) True LOC111191037
XM_022665071.1 mRNA downstream 68038 4726687 ~ 4732562 (+) True LOC103025123
XM_022665110.1 mRNA downstream 76019 4734668 ~ 4770755 (+) True xpo6
XM_007237548.3 mRNA downstream 114994 4773643 ~ 4789683 (+) True nme4
XM_022665015.1 mRNA downstream 118862 4777511 ~ 4789683 (+) False nme4
XR_002649326.1 other upstream 223239 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 362124 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 1097859 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1979033 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 3295375 1359112 ~ 1361935 (+) True G296790
XR_002649334.1 other downstream 1043905 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile