RNA id: TU409281


Basic Information

Item Value
RNA id TU409281
length 2687
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC111191040
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4802302 ~ 4806391 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTCTTCTGCCTGAGCTTCCTGCTTCTGTTTGTGTATGGTGTGGTAGAGTGATTTGCCACAAGGATACTTCAGGGACACTTCCAGACATGACATCCCCCTCCTAGAAGAGGCTCCTGCTGGCTCCTAGAAGAGGACCCACTTAGCAGGACCTATAGAAACTTTCAACAAGGCTAGAAGAGGAGGACAGGACCTAGTCGTGAAAGTTTCTGGACGCTTCCTCAGCCTGGAGTCAGCATCAACCTACTCAACGCAGTGGTGAATTTATCAGCTCTTACACTAGATGTCGCCATTCTCCTGCTGGCCGGGTTTGGCCGTTCTCTTTCCCCACCCTGACCCTGTCCTCCTGTAGGGGTCTGGAGCTCGCAACTTCTCACCTCACACTCTTATTATTAACAGCATTATCAGTTTAGCAGTTTACCTCCGAACAAGAGCAATAgagataaaataatttaaatataaataagttttaaaagcacaaaaacactCAGTACCCAAGTGTGCTACATTGTGACAGACCTTTCGCACCAGTGTCATGCTCGCCTTtaagcctgtgtgtgtttttaggcgGGCAGAGTCTGGCAGAGATAGTGTGAGAGGTAGCTGGCGTGCCCTGCCTGAAGATTGGGTTTCTCCAGCCCAGCATGTTAAAGCGAGCAGGAGTGGGCTGCCGCCTCTGATCTGAGCTTGAGAGAACATTCTGGAAGTCAAGTCTTGGAAACACTTTGCCTCCGGGGGAGCGGCTTTTGTTTTGGTTGACTCTCGCAGGTCAAACAAACACTCCCCCGCCACCCCCCACAGCCGTCCACCCATCCACTATCCACCCACAAACACCCCCCCACCCCAGCTCCCTCCCCCTATGCTCCAGTCCTCCCGCTCTTGACTCTATCGCTCCGTGTGTAATCCTTGGCAGTAGTGAGCACCCTCTTTCTTGGCCCAATAACACCCCCCAACATTGACCCCCCCCCGCCTGCCCCTCgctcaagttcaagttcaactGGCTATGACATCATGTCTGGTTGCTGCGGGCAACCAGACAGTCAGGACGTGACTTCTCAGTTTGCGGGCCTGTGCTGAAACTCTCACCCTCTGTCCTCGTATGCATTCCCTTCTTCCTTCTCTGTCCTGGGACGGGGTGGCGGTGCAGAACTCACGATTGGCCACCAGGGAGCTCTTCACGGCAACTTTTCACTTTACAGAGTATTATATAGAGGACCTCAGCTTTTGTGCTCGAATAACTTCAACAGAACTAAATTAATAATGCTGTTCTCAAAAAGACGCAAGTTTAGTTTGTGAATAATTAGTTTGAAGAGAATTCGCTGGAAAAAAGTGAGGGATATAATATCCTATACTCTTTATACtacctttttttcccccctttacTTGCCTATGCTGCCACATACACCCTACACCACACTGCCCAATACTACCCCCCTGTACTATGCTAAACTGCCCTTTGCTATCCCACACTATCCTATATCCCTATACactgtgtatttttacactACCCTGTACTGCCTAATACTACTCTATATTGCCCAATACGGCTCTTTTCTGTCCCACACTACCCCTATATTATAACACTGTTCTACCCTATGCTGCCCACTACCCACAATAGGAGGTAGGAgcacataaaaatataagaagTTGCATCACTTCTGTATATGATTCTCAGTTATGTCTATTGttaattttctgatttttctgatAATTTTCTGACTACACTACCCTGTAATCTGCCCTGTACTATCCAAATCccctaaacattttaaaatgctggTGTGTTGAGAAGAATTGAGCTtagtttttaaatcatttgacTTTTTGCAGAgttaatgctttattttttgttttttaaaggtcgAGTGAGGCGAGTTTAAGACCCCAAAGAGAAGAGAGTTGGCTGGAAAAAAAGGGAGGGGTAGACAGATGAAGGGAACGAAGTGAGCAGCGTTGAATGGGAGAATGAAAAGTCAAAGGGAGGTTAAGCAactgagtgagcgagagagtgaaAGCTGGAGCTAAAGACAGCAGCGGCACCTCGCTGCAGAGCTTCAGATGGCTGCCATGTGTTACGGAGCAGGCTGGCTGGGAGCAGGCCCGGGGCGGGTGTGGTTTGCACAGTAATGAGTAAAGTGCAGCGAGTAATGGAGGAGGCCCAGTGTGGTGGCTGCCCACTCGCAACGCTCAAATCAACCTCCACTGCCCCGCTCCCGCCGAGAACGCCTCGGCCCTCTCGGGCCTGCTCCAGATGGGccagataaacacactgtaatGCTTAGTGTACGCAGGAGGGAacgtgagggagagagagagaaagcaatgCAATAGAGAGGAACACAAATTATGAAGTGTGAGGAGAGTTTTAAAACCATGGTTTCAGGACTGTATGTTGAGTTTTATACAGTGACACTctgtataattgtataaatataaCTCATAAACTACTGATCATAAATTGCTGGTTTTCCATTCACCAAGTTTTGGAAAATTTTGAACATACCAAAAAAGAACCACACACAAATATTGCTAAAGATTGTATAAATAATTGCTAAAGCCGACTGTGAAAAAGAGTGAAAAGATTTAAAATGGTTTTTGAATAAACAATGATGTCAATCAACCCAATACTGTTTCATTCTTATTGCTGGAAATACAGTGTATATACAATGATGAACTACTGACTACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409279 lncRNA upstream 940 4795994 ~ 4802293 (+) False G297580
TU409280 lncRNA upstream 940 4795994 ~ 4802293 (+) True G297580
TU409261 lncRNA upstream 15157 4717779 ~ 4788076 (+) True G297571
TU409250 lncRNA upstream 144584 4654334 ~ 4658649 (+) True G297561
TU409304 lncRNA downstream 232384 5038775 ~ 5039047 (+) True G297604
TU409315 lncRNA downstream 255925 5062316 ~ 5062662 (+) True G297614
TU409330 lncRNA downstream 305989 5112380 ~ 5116676 (+) True LOC111191036
XR_002649324.1 lncRNA downstream 306109 5112500 ~ 5116810 (+) False LOC111191036
XR_002649325.1 lncRNA downstream 306109 5112500 ~ 5116810 (+) False LOC111191036
XM_007237548.3 mRNA upstream 13550 4773643 ~ 4789683 (+) True nme4
XM_022665015.1 mRNA upstream 13550 4777511 ~ 4789683 (+) False nme4
XM_022665110.1 mRNA upstream 32478 4734668 ~ 4770755 (+) True xpo6
XM_022665071.1 mRNA upstream 70671 4726687 ~ 4732562 (+) True LOC103025123
XM_022665002.1 mRNA upstream 91494 4709464 ~ 4711739 (+) True LOC111191037
XM_007237547.3 mRNA downstream 265013 5071404 ~ 5073183 (+) True gadd45gip1
XM_022664965.1 mRNA downstream 311189 5117580 ~ 5128255 (+) False recql5
XM_022664964.1 mRNA downstream 311194 5117585 ~ 5168515 (+) True recql5
XM_022664989.1 mRNA downstream 422653 5229044 ~ 5270102 (+) True xylt2
XM_022664960.1 mRNA downstream 471771 5278162 ~ 5344518 (+) False rab37
TU409249 other upstream 127714 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 369162 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 508047 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 1243782 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 2124956 2674748 ~ 2678277 (+) True LOC111191061
XR_002649334.1 other downstream 896163 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile