RNA id: TU409374


Basic Information

Item Value
RNA id TU409374
length 433
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G297658
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5391320 ~ 5458441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACCTTCAAACCTTCTCAACCCCCCTTTAGACTTCCCAGTCCACCTTAAACCTCCTCAAGCCTCCTTAAAACTGTTCAAATCTCCATATGACGCCATCGTCAAACCTCATCAAGCCTTGTTAGACCACCTTCAAACCTTCTCAAATCCCATTTAGGATTTCCCAAACCTTAACACCATCATCAAACCTTCTCAAACCTTCTCAAATCCCAATTAAACCTCTTCACATTATCAAACCTTATCAAACCACCCCAGGCCTCCTTAAACATCTCCAAACATCCTCAAACCTTTTCAAATCGCCCCAATCCTCCTTAGACCTCATCAAACCTTCTCAACTCCCCTTTAGACTTCCCAGTACCCCTCAAACCTCCTAAACACCTTTTAAATCCCATTTAGGATTTCCCAAACCTTAACACCATCATCAAACCTTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409370 lncRNA upstream 53111 5361406 ~ 5403107 (+) True G297656
TU409386 lncRNA upstream 57387 5395724 ~ 5398831 (+) True G297660
TU409342 lncRNA upstream 253556 5169353 ~ 5202662 (+) False G297634
TU409348 lncRNA upstream 277480 5178355 ~ 5178738 (+) True G297638
TU409343 lncRNA upstream 283438 5169428 ~ 5172780 (+) True G297634
TU409372 lncRNA downstream 108 5458549 ~ 5461512 (+) True G297657
TU409373 lncRNA downstream 108 5458549 ~ 5461512 (+) False G297657
TU409415 lncRNA downstream 4264 5462705 ~ 5466991 (+) True G297679
TU409416 lncRNA downstream 4264 5462705 ~ 5464657 (+) False G297679
XR_002649341.1 lncRNA downstream 9482 5467923 ~ 5481340 (+) True LOC111191054
XM_022665081.1 mRNA upstream 4826 5415197 ~ 5451392 (+) True glis2
XM_022665001.1 mRNA upstream 99339 5348375 ~ 5356879 (+) True LOC103026631
XM_022664960.1 mRNA upstream 111700 5278162 ~ 5344518 (+) False rab37
XM_022664961.1 mRNA upstream 111700 5305680 ~ 5344518 (+) True rab37
XM_022664989.1 mRNA upstream 186116 5229044 ~ 5270102 (+) True xylt2
XM_022665083.1 mRNA downstream 198325 5656766 ~ 5666429 (+) True dnaja3
XM_022665056.1 mRNA downstream 244071 5702512 ~ 5711874 (+) False LOC103033323
XM_022665055.1 mRNA downstream 244113 5702554 ~ 5711874 (+) False LOC103033323
XM_007232197.1 mRNA downstream 260628 5719069 ~ 5719464 (+) True LOC103033642
XM_007232186.3 mRNA downstream 285347 5743788 ~ 5761476 (+) True ccnf
TU409249 other upstream 780699 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 1022147 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1161032 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 1896767 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 2777941 2674748 ~ 2678277 (+) True LOC111191061
XR_002649334.1 other downstream 244113 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile