RNA id: TU409386


Basic Information

Item Value
RNA id TU409386
length 3080
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G297660
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5395724 ~ 5398831 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgcattgaaaaagagaaggtgtgtccaaatttttggcctgtactgcaTGCACtttccagcttttttttttttttttttttttacggctGATCTCATTTAATTTAGAGATCTAAACCCGACCAAAACATTAGGACCAGCACGAGCAGACCCAAATAACAGTATGTAATCAGTCATTTGAGCTGTGCGCCCGGCCGGGGAACCCAGCCCAGCCCAGCTGAGCAGGAGTGAGGTCAAGTGCACAGTGCCGCCTGCccatctgtccatctgtctgtaaTCCATCCCACCCTCCCTCGCTCGCTTCCTGCGTGTCACTCCACGGACAGACTTCGCTCTATTTACAAAGTGCACAAAGCAGAGCGGATCTTTGGTCCTCCGTaaaaagacagatagacagagagagagagagacaagcgATAGATCACTGCTGTTTAGGGACACTCCtctataaaagaaaagaaaagaaaagacgaAAGAGAacgaacaaaaataaaattataaaataaaacgtgTCATTTCCTCTTAACAATTCAACGCCACGGGGCCGGAACATCgcgcttctttttttttttttttttgaggccaGGTATGCTCACAGTGATGCTctatgattttcttttcttttaacaaacaaaaaaagaaaaaagaaagtttgTTTAGGACAGAAAGGAAAAGAGCAGACAGGCTTTTAGCTCCATTTGaacaaagagacagacagacatagaagagagagagcgaaagagagagagagagagatagaaagaggagATTCTGCTGGGTGTACAGGGGTTGGGTGATTGGGTTTTTTGGGGGTTTGTGGAGTACAGGGAGGGTGTTTTTTAGGGTTTAAGGGTTTTGGGGTGAGGGATTTGGGCTAGGGTTCCTCCAGTTTTAACGGTAGTGATAGGACAGAGACAGTAAGGCCTGAATCAGAGACTCCGCCCCTCCACAGGAAGAGCAGTGGTCTGCAGATGAGCAGACCTGCAGGAGTGTTGCCAAAGGTTTTCTAGTGTGGAATCCCAATTCAACGTTTTCTACGTTTTATACGTTTGCTGTCGGAcgtttacacacactcatattcgTGGACATGAGGATCACGGCTACTTTAAAGGGATTTTAATGGCTTATTTTTCATTGTCTGAAAGATTtagtgtgttttcacaccagcactttGCCactttggtctggttaaaacatGCTCTGGTTCATTAACCTCAAAAACCTCTCCATATTTGAGCaaaacggctgttcaggtgcagtttaatctgatttattacctgaattaataataactacagctataaacaaacgctgtatctgctgctgctttatgctaagcttttttttcacattttctacaTTCAGTCTTAAAGCAGCTGTACAGTAATATGTGCTCGTCTAAAACGAAAACAGAATGTTCTAGCTAAcgctctatttatttttttggttttgaacCAGAATCAGAGAAGACAATGTACTTGCATGTTTCTTTttgtgcgcattttggtgcattagGGTTTacgtttgtgcctgtgtgaaaacaaaccaaaccaagtaagaaaaaaaaatactccaagTATACAAACTTATAAACCAACTCCATAGAAatcaactacaggtgtgaaaacgccctaaaagaCCAATTCTGGGTCAAACACTTCAGTACAGAACAGTAACAGAAGTCTGAGCTGTTTGTAGCTATTTGCACAATTTTTGCAGATTTGATCAAgtttaatcaaatattttgtatgttttatggATCCAAAACGAAACTTCAAAGCTTCGTATTCGCAGGTCCTAAAGGAACACCAAATTGTGTCCAATGGTGTCTAAAGCTGATGGTTACAAAAACCTTTTGTATGTGGGCCAAGAAAAAAGGCCACCAGCCACAACTCCGCCTGTTTTCaaattgccgagtagcatcacagcgtgctaggaggaaagcgcagccactcggttccgatacatcagctcacagatgcagccttgtgctgatccacatcaccctaggagtgatgaggggaaagagcgccatctactgtacccacccagagagagagagagcaaggccaatcgtGCTTtctcaggactctggcagctgatggcaagctgcatgaacaggattcgaaccggcgatctcctaaACAGAGTGGcagcatgtgtatatttactttaaatctgTGTCAATTTAAGATTATGAAGAGTATTTGAAGATTTTGGTGGGAATTATTGCTgcaaggatttgattgcattcagaaaCAAGAGCGTTAATGAAGTCAGAAGTTTGGATGGctggatggatggagggaggaTGATTTTCTTCTACTGCTCCAAAGCTCAATACTCAGGGCTTTATAACCCTTAGCTCTAGAGCATGCTTGCCATTGGGCAGTAGCTCATTTCTATAGGGAAtagacaagctgtatgtgtgcatttgcacatctatgCAGCTTAaatgggtgtccacaaacatttggacatgtagAGTCAGTTCCACAGACaggggattaagcctagtcttggactaaacagcattttttaaaggtattttaGGAACTCACTATAAGCCATAGACCCTCAAATCcgtgatgagtgtgtgtaaaagcacacagtgtgtgtgtaaaagcaaTAATCAGAGATATCTGGACTGAGAGTTACTGTGTGTTACTGAGTGTGAGCACAGATCCGAGAGGTACAGGCGTTTAGTGTACTCTCCGACTGTGGAAGAATGAACCGTGTGAGCgcgagagtgagtgtgtgaatgagtgtgagtgtgtgttcacgTGTAGTTAAGTAAGTGTGTTTAGTATTTCTGCGCCATGTTGTTCTATTAACCCTTGACTGACCCCTCCGGTTCCGTCAGCACTATCCTATAGGTTCTGTATGTCtacatgagagagtgagagcgagacagagtgagagagtctGTTCTTTTCCCACTACAGACAGGAAGTTAACAGTCCTCGGACCCTTCATTGTCGGAGGCGGTGTCGGAGTCTGCAGTGTCGGTAAGGATGCGACCCGGGGTGACGATGACTGCGCGGCGCTGCTCCTCCTCGGGCAAACCCATCTTCTCCTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409342 lncRNA upstream 193062 5169353 ~ 5202662 (+) False G297634
TU409348 lncRNA upstream 216986 5178355 ~ 5178738 (+) True G297638
TU409343 lncRNA upstream 222944 5169428 ~ 5172780 (+) True G297634
XR_002649324.1 lncRNA upstream 278914 5112500 ~ 5116810 (+) False LOC111191036
XR_002649325.1 lncRNA upstream 278914 5112500 ~ 5116810 (+) False LOC111191036
TU409374 lncRNA downstream 57387 5456218 ~ 5458441 (+) False G297658
TU409377 lncRNA downstream 58652 5457483 ~ 5458441 (+) False G297658
TU409372 lncRNA downstream 59718 5458549 ~ 5461512 (+) True G297657
TU409373 lncRNA downstream 59718 5458549 ~ 5461512 (+) False G297657
TU409415 lncRNA downstream 63874 5462705 ~ 5466991 (+) True G297679
XM_022665001.1 mRNA upstream 38845 5348375 ~ 5356879 (+) True LOC103026631
XM_022664960.1 mRNA upstream 51206 5278162 ~ 5344518 (+) False rab37
XM_022664961.1 mRNA upstream 51206 5305680 ~ 5344518 (+) True rab37
XM_022664989.1 mRNA upstream 125622 5229044 ~ 5270102 (+) True xylt2
XM_022664964.1 mRNA upstream 227209 5117585 ~ 5168515 (+) True recql5
XM_022665081.1 mRNA downstream 16366 5415197 ~ 5451392 (+) True glis2
XM_022665083.1 mRNA downstream 257935 5656766 ~ 5666429 (+) True dnaja3
XM_022665056.1 mRNA downstream 303681 5702512 ~ 5711874 (+) False LOC103033323
XM_022665055.1 mRNA downstream 303723 5702554 ~ 5711874 (+) False LOC103033323
XM_007232197.1 mRNA downstream 320238 5719069 ~ 5719464 (+) True LOC103033642
TU409249 other upstream 720205 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 961653 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1100538 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 1836273 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 2717447 2674748 ~ 2678277 (+) True LOC111191061
XR_002649334.1 other downstream 303723 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile