RNA id: TU409776


Basic Information

Item Value
RNA id TU409776
length 450
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G297903
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5601099 ~ 5602879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacttcaaaccccacaccacacactccacaccacacataccccacaccacacacactttaaaccacacacactccacagctcatataccccacaccacacacacttcacaccacacacactccacaccacacataccccacaccccacacactccataccacacataccccacaccccacacactccataccacacacacactccacagctcacataccccacaccacacacacttcaaaccacacataccccacaccacacacactccacaccacacaaaccccacaccacacacacttcaaaccacacaaaccccacaccacacacacttcaaaccacacaaaccccacaccacacacacttcaaaccacacataccccacaccacacacacttcaaaccacacataccccacaccacacacacttcaaaccacacataccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409775 lncRNA upstream 876 5600192 ~ 5601013 (+) True G297902
TU409773 lncRNA upstream 2813 5598856 ~ 5599076 (+) True G297901
XR_002649341.1 lncRNA upstream 120549 5467923 ~ 5481340 (+) True LOC111191054
TU409420 lncRNA upstream 128382 5472799 ~ 5473507 (+) True G297681
TU409416 lncRNA upstream 137232 5462705 ~ 5464657 (+) False G297679
TU409787 lncRNA downstream 1310 5604189 ~ 5611204 (+) True G297904
TU409781 lncRNA downstream 4734 5607613 ~ 5612425 (+) False G297904
TU409786 lncRNA downstream 4734 5607613 ~ 5612093 (+) False G297904
TU409790 lncRNA downstream 4734 5607613 ~ 5608088 (+) False G297904
TU409802 lncRNA downstream 20839 5623718 ~ 5624869 (+) True G297910
XM_022665081.1 mRNA upstream 150497 5415197 ~ 5451392 (+) True glis2
XM_022665001.1 mRNA upstream 245010 5348375 ~ 5356879 (+) True LOC103026631
XM_022664960.1 mRNA upstream 257371 5278162 ~ 5344518 (+) False rab37
XM_022664961.1 mRNA upstream 257371 5305680 ~ 5344518 (+) True rab37
XM_022664989.1 mRNA upstream 331787 5229044 ~ 5270102 (+) True xylt2
XM_022665083.1 mRNA downstream 53887 5656766 ~ 5666429 (+) True dnaja3
XM_022665056.1 mRNA downstream 99633 5702512 ~ 5711874 (+) False LOC103033323
XM_022665055.1 mRNA downstream 99675 5702554 ~ 5711874 (+) False LOC103033323
XM_007232197.1 mRNA downstream 116190 5719069 ~ 5719464 (+) True LOC103033642
XM_007232186.3 mRNA downstream 140909 5743788 ~ 5761476 (+) True ccnf
TU409249 other upstream 926370 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 1167818 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1306703 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 2042438 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 2923612 2674748 ~ 2678277 (+) True LOC111191061
XR_002649334.1 other downstream 99675 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile