RNA id: TU409808


Basic Information

Item Value
RNA id TU409808
length 354
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G297916
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5685435 ~ 5686549 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAATGCATTATTCTCCAGCAGAAACTTCACCGCCTCCATATAGATGGTGGTGTTGGGTCTGGTAAAGGGCTGGTGTACGACAGGATGCTCAGTATCAGAATCTGCAGCGTAACCCTGCCCTGTTTTAACCTCCTGGATGGTGGAAGACCTATGTTCCTCTGTCCGATCACCCAGAGCTGGTGTGTTACTCAGAGACTCACTGTCCCCCACTTCCTGTCCCTGTCCTCCCTCCACCTGGGTCTGAGTGCTGTCCACCTCTGGAAGACGCGTCAGGGCTGCCTGGAGTTTTGTAGCTTTGAGGAAAGCCATTTCTGCTCGGATGGGGTTCTCCTGTGCCAGGTAGAACAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409802 lncRNA upstream 60566 5623718 ~ 5624869 (+) True G297910
TU409781 lncRNA upstream 73010 5607613 ~ 5612425 (+) False G297904
TU409786 lncRNA upstream 73342 5607613 ~ 5612093 (+) False G297904
TU409787 lncRNA upstream 74231 5604189 ~ 5611204 (+) True G297904
TU409790 lncRNA upstream 77347 5607613 ~ 5608088 (+) False G297904
TU409817 lncRNA downstream 17185 5703734 ~ 5741207 (+) True G297924
TU409819 lncRNA downstream 43881 5730430 ~ 5731876 (+) True G297926
TU409823 lncRNA downstream 71802 5758351 ~ 5762495 (+) True G297930
TU409839 lncRNA downstream 80973 5767522 ~ 5834140 (+) False G297933
TU409834 lncRNA downstream 98483 5785032 ~ 5834140 (+) True G297933
XM_022665083.1 mRNA upstream 19006 5656766 ~ 5666429 (+) True dnaja3
XM_022665081.1 mRNA upstream 234043 5415197 ~ 5451392 (+) True glis2
XM_022665001.1 mRNA upstream 328556 5348375 ~ 5356879 (+) True LOC103026631
XM_022664960.1 mRNA upstream 340917 5278162 ~ 5344518 (+) False rab37
XM_022664961.1 mRNA upstream 340917 5305680 ~ 5344518 (+) True rab37
XM_022665056.1 mRNA downstream 15963 5702512 ~ 5711874 (+) False LOC103033323
XM_022665055.1 mRNA downstream 16005 5702554 ~ 5711874 (+) False LOC103033323
XM_007232197.1 mRNA downstream 32520 5719069 ~ 5719464 (+) True LOC103033642
XM_007232186.3 mRNA downstream 57239 5743788 ~ 5761476 (+) True ccnf
XM_022665108.1 mRNA downstream 78450 5764999 ~ 5828725 (+) True abca3
TU409249 other upstream 1009916 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 1251364 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1390249 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 2125984 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 3007158 2674748 ~ 2678277 (+) True LOC111191061
XR_002649334.1 other downstream 16005 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile