RNA id: TU409938


Basic Information

Item Value
RNA id TU409938
length 283
lncRNA type intronic
GC content 0.45
exon number 2
gene id G298009
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5873481 ~ 5874591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagttgctaacgttttccaggtggttgctaagtggttgctaggtgttgctagtggttgctaggcagttgctaacattttcctaagtggttgctaggcagttgctaacattttccaggtggttgctaagctgttgctaagtggttgctaggcagttgctttcatttctaaagtggttgctaagctgttgctaggcagtttctaacgttttcctggtggttgctaaggtgttgctaactggttgctaggcagttgctataatttctaaagtggttgctaagtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409839 lncRNA upstream 39341 5767522 ~ 5834140 (+) False G297933
TU409931 lncRNA downstream 7913 5882321 ~ 5887115 (+) True G298004
XM_022665113.1 mRNA upstream 21710 5836505 ~ 5851771 (+) True LOC103034280
XM_022665108.1 mRNA upstream 44756 5764999 ~ 5828725 (+) True abca3
XM_007232186.3 mRNA upstream 112005 5743788 ~ 5761476 (+) True ccnf
XM_007232197.1 mRNA upstream 154017 5719069 ~ 5719464 (+) True LOC103033642
XM_022665055.1 mRNA upstream 161607 5702554 ~ 5711874 (+) False LOC103033323
XM_022665115.1 mRNA downstream 20358 5894766 ~ 5912389 (+) True LOC103034605
XM_022665114.1 mRNA downstream 42614 5917022 ~ 5930346 (+) True LOC111191063
XM_022665117.1 mRNA downstream 65839 5940247 ~ 5951494 (+) True rnps1
XM_022665116.1 mRNA downstream 65847 5940255 ~ 5951494 (+) False rnps1
XM_022665101.1 mRNA downstream 79238 5953646 ~ 5964403 (+) True LOC111191058
XR_002649334.1 other upstream 161607 5702554 ~ 5711874 (+) True LOC103033323
TU409249 other upstream 1197962 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 1439410 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1578295 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 2314030 3550344 ~ 3559451 (+) False LOC103030733

Expression Profile