RNA id: XM_007238229.3


Basic Information

Item Value
RNA id XM_007238229.3
length 1796
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC103038737
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4080149 ~ 4159462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagcggtggAGAGACAGTGGGGTTCAGTGCTGGATCTGAAGGCAGAGCTGGAGCTCCTCCACCATGGCTACTGCATAGGAATCCGTCTGCACAGCAGCAGTGGGATATATATAAGGTGAGAGAAGtaggaggaaaagaaaaagtgaaagaagaaaagcaaaaagacagAGACATGGCGGCGGAGGAGAAGCCCGGAGTGAAGAACAGCACCTCCATCCTTCCCTGCTTCCTGTTCGTGGAGCTGGTGATCATGGCGGGCACCGTGCTGTTGGCGTATTACTTCGAGTACACCGACACCTTCCCCGTGCACGTCCAGGGCTTCTTCTGCTACGACAAGTCCTTCTCCAAGCCCTACCCGGGTCCCGACGAGACCAGCAAAGTGCCGCCGGTGCTGGTCTACTCGCTGGTCACCGCCGTGCCCACCATCACGATTCTAGCCGGTGAGTTGATGGCATTCTTCATGAAGTCTGAAGGAACTCAAGAGAAGACCATCGTCACAGCAGACTGCTGCTACTTCAACCCGCTGCTGCGACGCATCATACGCTTTCTAGgcgTCTACTCCTTTGGTCTCTTCACCACTACTATCTTTGCCAACGCCGGTCAGGTGGTCACAGGAAACCAGACGCCTCACTTCCTGTCAGCTTGCCGGCCGAACTACACAGCGCTGGGCTGCCAGTCGAATCTCCAGTACATCACTGAACGTCGTGCCTGCACCGGGAACCCTCTCATCGTGGCATCTGCCCGCAAATCCTTCCCTTCCAAGGATGCAGCACTGAGCGTCTACTCTGCAGTTTATACTGTGATGTACGTGACGTTGGTGTTCAGGACGAAAGGTACCCGCCTGACTAAACCGACCCTCAGCCTCACCCTGCTGTGCCTGGCCATGCTGGTGGGGGTGGTACGGGTGGCGGAGTACCGCAACCACTGGGCAGATGTTCTTGCTGGATACTTTACCGGAGGAGCCATCGCTGTTTTTCTGGTGACCTGTGTGATCAACAACTTTCAGCAGACAAAGCCCCCTCCTCTTCCCCTGCGACCCCAGCGCCCAGAGTCCGTGCTGGGCATGCCCATGGTGGCGCTGCCCTGTGTGGAGAGTCCACTCGAAAAACTCCAAGGGGATCTCCATTCACTGAGATCACATGACCATCAGCACTATCGGTTCCCCGCCACCCCCGATGTCCTCATACCGTCTCGCTCCATTTCCAGCGAAGTCTAGACCAGCCGTCCGAGCCGCACGCTCACCAGTGCTCCGCCCACACCGCCGGACGCTACGCCACCCTCCACCGCTCCTACTCCACGCAGGTCTAGACCCGCCCGCTCCGcctccaccctccaccccaTCAGGCCCTCTGTTCCATGCTGCCCTCAGGGCTGCCATGCGCTGCTCCAACAAACCAGAAGCGACAATCCGCGGAAAGCTCGGTTACGGAGCTTCGCCCGAGCTTTTGGTCCAGGATGTTTGTGCCAGCAAAAGCTCAAGGTGATGGAACGTTTGTCTGAGGCAGACATTATGTCTTGGTTAGTTTGTCTGAGCAGTGCATTGAAGCCTTTACATTTAGCTTAAAAAACCTGTCCTGTCCAGTCCAAACCATCCAGACCTATTCCCAGGGGAACCGATGGAGTCCTGCTCATGTGCGGGACTTCTGAGAAAATCAAAAAAGAAAcgaacaaaccaaaaaaagactaaaataatAGCACAGTGTCTGGTAGGcctcttttatttattgatttattgatttatttattatttttgtatttttttttttttacatttttgtgtgttttttt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408998 lncRNA upstream 54789 4025049 ~ 4025360 (+) True G297398
TU408988 lncRNA upstream 56518 4021560 ~ 4023631 (+) True G297392
TU408971 lncRNA upstream 127654 3947233 ~ 3952495 (+) True G297387
TU409152 lncRNA downstream 55833 4215295 ~ 4275823 (+) True G297497
TU409158 lncRNA downstream 94744 4254206 ~ 4299447 (+) False LOC103041102
TU409157 lncRNA downstream 132895 4292357 ~ 4295607 (+) False LOC103041102
TU409159 lncRNA downstream 132895 4292357 ~ 4299447 (+) True LOC103041102
TU409161 lncRNA downstream 132895 4292357 ~ 4299447 (+) False LOC103041102
XM_022664970.1 mRNA upstream 254509 3776523 ~ 3825640 (+) True LOC103046751
XM_022664969.1 mRNA upstream 313662 3717090 ~ 3766487 (+) False LOC103025262
XM_022664968.1 mRNA upstream 318402 3704804 ~ 3761747 (+) True LOC103025262
XM_022664967.1 mRNA upstream 318402 3717089 ~ 3761747 (+) False LOC103025262
XM_022665062.1 mRNA upstream 428814 3645713 ~ 3651335 (+) True LOC111191046
XM_022664963.1 mRNA downstream 93554 4253016 ~ 4295186 (+) False LOC103041102
XM_022665057.1 mRNA downstream 163649 4323111 ~ 4346597 (+) True cnn1
XM_022665078.1 mRNA downstream 197525 4356987 ~ 4363604 (+) True tmem205
XM_022665106.1 mRNA downstream 208256 4367718 ~ 4392866 (+) True LOC103038197
XM_022665104.1 mRNA downstream 217648 4377110 ~ 4392866 (+) False LOC103038197
TU408827 other upstream 520698 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1401872 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2718214 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 2879361 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 4039258 36851 ~ 40891 (+) False LOC103026352
XR_002649321.1 other downstream 93554 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 260535 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 491181 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1543092 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile