RNA id: XM_015603960.2


Basic Information

Item Value
RNA id XM_015603960.2
length 3018
RNA type mRNA
GC content 0.48
exon number 18
gene id ilf3
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3574633 ~ 3595371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACTTTGGACTGTCTCCTCCCTCATTGGCCGGGGGTAGTGCTCAGAGGCGTTTCTGCGTCGAGCTCAGAGTATAACCTAGCTACTGCCGTTCACTGACAGGAGCAGCAGTACTCTGCCACCTCAATATTTCAACTTTTAACCGCCAAACTGAAGGCCCACTTCGTTTCAACTATGCCTCCTCCCCTCCGTCATCGCTCCATGCGCATCTTTGTGAACGATGATCGCCATGTTATGGCCAAACACTCTGCCATCTATCCTACTCAAGAAGAGCTTGAGGCTGTACAGAATATGGTCTCCCACACTGAGCGTGCCCTCAAGGCTGTTTCCGATTGGCTGGATGAGCAGGAGCGTGGCACTGcaaagacacagacagacactgaTGTGGATGGCGAGAAGGAGAGTGAACCTAAGACAGCCGAGCAGGCCACGCGCTCCCTGCGTGGGGTGATGAGGGTGGGCCTGGTGGCTAAAGGCCTGCTGCTAAAGGGCGATTTGGGCCTGGAACTGGTTCTGCTTTGCAAGGACAAGCCAACAACCACGCTGCTAAGGAAAGTGGCAGAGAATCTCGGTGTGCAGCTCAAGCTCATTACTGAAGATAAGTACGAGGTCACCCCTTCTATCCGTGAAGCTTCCATTGTGATCAAGAACGCCAAGCAgcctcccctctctctcaccatcCATCTCACCTCACCCGTCGTCAGAGAGGAGGCGGAGAAACGGGCTGCTGGAGAAACGCTATCAGTCAACGATCCCCCGGATGTACTGGACAGGCAGAAATGCCTGGCTGCCTTGGCGTCTCTTCGCCACGCCAAGTGGTTCCAGGCCAGGGCCAATGGGCTGCGTTCCTGTGTGATCGTCATCCGGATTCTTAGGGACCTTTGTGCACGTGTTCCTACCTGGGCCCCACTTAGAGGATGGCCTTTGGAGCTTTTGTGTGAGAAAGCTATTGGTACAGGGAACCGACCAATGGGAGCAGGCGAGGCTCTCCGGAGAGTTCTTGAGTGTTTAGCTTCTGGAATCCTGATGGCAGATGGTTCCGGTATCTCGGACCCCTGTGAGAAAGATCCTACTGATGCCATCGGGCATATGGACTACCAGCAGCGGGAGGACATTACACAGAGTGCTCAGCATGCTTTAAGGCTTTCTGCATTTGGGCAGCTTCACAAAGTGCTCGGCATGGATCCTTTGCCTTCAAAGATGCCCCGGAAACCAAAGAGTGAGACCCCCATCGACTACACAGTCCAGATTCCACCTAGCACAACTTATGCTCCGCCCATGAAGCGGCCCATTGAAGAAGAGGATGGAAGCGATGATAAGAGTCccaacaagaagaagaagaaactgCAGAAGAAATCTGGAGAGGAAAAGTCAGAGCCTCCTCAGGCTATGAATGCTCTGATGCGACTGAACCAGCTTAAGCCTGGACTCCAGTATAAACTCATCTCTCAGACTGGTCCTGTACATGTGCCTGTCTTCACCATGTCTGTGGAGGTCGATGGGAAGAACTTTGAAGCTTCAGGCCCCTCTAAACGCACTGCCAAACTACACGTAGCTGTTAAGGTCCTGCAGGACATGGGTCTCCCCACAGGGGTGGAGCAGAAGGTTGCTGAACCAGCAAAGACTGATGAAGTGGCTGCAAATGCAGAGGAGGACATCAAACACACAGATATACTGACTGAAGCTGCTGTCCCATCTGCTCTGACTAACTCTGAGCCTGCTGAAAATACTGAGACTGCCCGCCAGCAAGGCCCGATTCTGACCAAACACGGCAAGAACCCTGTGATGGAGCTGAATGAGAAACGCAGAGGCCTCAAGTATGAGCTGATCTCTGAGACCGGCGGCAGCCATGACAAACGCTTTGTGATGGAGGTGGAGATAGATGGACAGAAGTTCCAGGGAACAGGCTCTAATAAGAAGGTGGCGAAGGCTTATGCAGCTCTGGCTGCCTTAGAGAAACTGTTTCCAGAGGGATCTGTCTCGGATGCagccaagaaaaagaaaactatgAATGCTCCTGGTTTTGGAATGATGGGCGGACCACCTGATGACCAATCGGGCATTCCCAGAGGCCGTGGGAGGGGCCGGGGGCGGGGCAGGGGCAGAGGTTTTAATAACAGTGGAGGATACAATCAAGGTGGTTATGGAAGTTATGGATATGGAAACAATGCTAACTCTGGCTACAGTGACTTTGTCTCAGACTGCTATGGCTACAACGAGTTTGCGACAGATGTCTGATGTTTTCAGATACAAATactggacaaaaataaatattagtagGCAATATGACCGTGATACATGACTAATTTCTCATCAACTTTAGTCCCTTCACTTTCTGTCCTTACTGTATACggtttaacaataaaataaacacaaaaaacaacctCCACCCTGCCCTTCCTGCCCGCCCCTTCAACACTGGATTCATCTGGGACTTTGCTGTCGTCTCTCCATAAAGGAAAAGATGGAAATGATGATAATGACTCTTTTGATACTGTCTTCTCAACCTGGAGATCTCACACTGCTGCAGTGAAGCATTAAATGCATTaatgctctctgattggatggTTTTGGACAGTTTGAGCGTGCGTTCTACAGCATGTGCCCATCCACTGTGCCCTTCAGTCTTTACTGGGCACTGGAAAATCACTGATTACAAatgatttttctttctctccatgcttgtttttgtacttttgtagttttaatgcagttttattgttttatttttgtcctgCTTCCACACCTTCAAATGccatacttattttttttattattattatgctctgttttttaaactgtggtgtcatatttttttatgtggtgGGAAGTTTGCAGAGCTcccatatattaaattataacattttttccTGTACCATTATGTGAAATGATGCTGTGAAACCATACAGAGGAGACCATAGTACCAGTGCATATTTAGATTGTTTTATGAAACCTGTTTTGTAagttcctttttatttcattgttttttaaataaacatgtggTCCCCCTTATAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408751 lncRNA upstream 162548 3411256 ~ 3412085 (+) True G297218
TU408750 lncRNA upstream 163821 3348742 ~ 3410812 (+) True G297217
TU408739 lncRNA upstream 198899 3346094 ~ 3375734 (+) True G297214
TU408717 lncRNA upstream 262115 3311910 ~ 3312518 (+) False G297203
TU408849 lncRNA downstream 69840 3661243 ~ 3664579 (+) True G297303
TU408865 lncRNA downstream 102295 3693698 ~ 3697530 (+) False G297318
TU408866 lncRNA downstream 102295 3693698 ~ 3697530 (+) True G297318
TU408867 lncRNA downstream 102295 3693698 ~ 3697530 (+) False G297318
TU408868 lncRNA downstream 102295 3693698 ~ 3697530 (+) False G297318
XM_022664976.1 mRNA upstream 6770 3550327 ~ 3567863 (+) True LOC103030733
XM_022665093.1 mRNA upstream 171070 3362434 ~ 3403563 (+) False LOC103038127
XM_022664990.1 mRNA downstream 5124 3596527 ~ 3620827 (+) True farsa
XM_022665062.1 mRNA downstream 54310 3645713 ~ 3651335 (+) True LOC111191046
XM_022664968.1 mRNA downstream 113401 3704804 ~ 3761747 (+) True LOC103025262
XM_022664967.1 mRNA downstream 125686 3717089 ~ 3761747 (+) False LOC103025262
XM_022664969.1 mRNA downstream 125687 3717090 ~ 3766487 (+) False LOC103025262
TU408827 other upstream 15182 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 896356 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2212698 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 2373845 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 3533742 36851 ~ 40891 (+) False LOC103026352
XR_002649321.1 other downstream 661613 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 828594 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 1059240 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 2111151 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile