RNA id: XM_022664961.1


Basic Information

Item Value
RNA id XM_022664961.1
length 5269
RNA type mRNA
GC content 0.43
exon number 9
gene id rab37
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5278162 ~ 5344518 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCGGTGCGGAGCTCTGAGGGTTTAGCGCCTGTTGCCCGTGTGTGCGCGGCGACTGCTGCTGTTCGCTTGGCCGGATCAGGGTGAGCCTCCgccggctgtgtgtgtgtgagtgagcggGTGTGAGATAGCGGGTGCGCCCGGAGCGAGCAGCCGCTGCTGGGGAGCGGAGGATGGGGGCGAGGCGGGGACTGGAGTCGGTGTAACGCCTCCAGGCTCGGGCGGAAGGGACGGAGCTCGAGTTGAAGCACTTGTGGAGGCTGGCGCGGGCAGAGCTGCTGCGGACTCCGGGGCTTTACGGGCGGGTTTGAGCGGCGGAATGCGAGAGCAGCAGACGGGGCTGAGCGCGTGAACACCGCGGGTTCCGGTTCGAGCTGCTGGGCACCATGTCTTCTAGACAGGCGTCTCTGGACCAGGAGGTTAAAAACGGAACCTCGCGGAACGTGCTGGAGCGATGCGCCTCGGTTAACGAGTATTTTGACATTTCCTTCAAGGTGATGCTGCTGGGCGACTCGGCTGTAGGGAAGACTTGTGTCCTGGTGCGCTTTAAAGACGGTGCCTTTCTGGGGGGAAACTTCATCGCCACCGTGGGAATAGACTTTAGGAACAAGGTGGTCTCAGTGGATAATATGAAGGTCAAACTCCAGatttgggacacagccgggcAGGAGAGGTTCCGCAGTGTCACTCATGCGTATTACCGAGATGCACAGGCTCTGCTGCTTCTGTACGACATCACCAGGAAGTCGTCCTTCGACAACATCAGGGCCTGGCTGACTGAAATTCATGAGTATGCACAGAAGGATGTGGTCATCATGTTGCTTGGCAACAAGTCAGACATGGCGGCTGAGCGGGTCATCAAGCACGAGGAGGGACAGAAGCTGGCTAAGGAGTATGGAGTTCCCTTCATGGAGACGAGTGCCAAGACTGGTCTTAACGTGGAGCTTGCATTTCATGCCATAGCGAGAGAGCTGACGCAGAGAGCAGCCAGCCAGCCCCACGAGCCCAAGTTCCAGATCCACGATTACATCGAGTCCCAGAAGCAGAAGTCCAACTGCTGCGGAGGACTGATGTGACGACGCTCATCTTCCCTCCAGAGAGcgagaagaagaagaacgaTTTTACAGAGGCATTAATGAAcgaaggagaagagagagagggagagagagagagaataatggACTGATAAATGCAGATCATGCGTATAAAGACGGGTGTGTGAGTGAAATGCTTGTTATATGGATGTGTCTCGCACTCTCTTGGCATTAAACCCATCTGCCCTTTACCATCAGGTGTAGCTACACGTCCACCAATCCCTGCTCTTTATCCTCCGACTGCACTGAAAAGAGCTCCGTCCCCTGGAGGTTAGAGAGCTGAGCTGCAAAAACGCCAGAAACAGCGACGTGCAGAAGCTTCGCTCAGCACTGGAGGATCCAGAATCACTCGCTACCTGAATCTACTGTtagttaattattagtttagttGTAAGTACAGCACTTTTCATCGTCACCATCCCTGTAAAAGTGATAGttcagtgaaaatgaaatgTACAGCTTTCCTGTTACCCTGAACCCTGTCTGAAGGTCATTCTTGCTTCTTTAATTTTGTGCTGGAGCATCCTGGCTAACAGAGCTACCAAATAACTGGAGCTTATATAGCCGAACAATCAGCTCTGAGCAAGACTACAACCTATCAAACGCAAAAAAGGCTCATTTATACTCGATTTGTGCTTTTCAAAAAAATCCTTTTGGATTGGCAAAGGGTGACAATGGACGGTAAGCAGTGCATTCACTAGAGGGCAGTGCAGAGTCAAACTTTTCTGAAAATACCAAACATGGCGTTAACGGTAAAGAACTTTGCGATAATTAGCGAAAAAAATACATTCCGTTTCATCCTGatcatgtttatgtttatttaggagTAACCGTGTTTCCCTGCTTGCATAGTTGGCTGCTACACTGCCTCTACTATTTTCAGTGGTACTACTTTGTTGCACGAATGCAAACAATTAAAGAATGCTTTTAATTTGTACGCTAGTAGAAAATTGgtagaaatacagagaaaattaATGCTTCCTGTACACATGCTTTTAGAAAATGTGCTTAAATAAGGATGAAATTTAAGTTTTGAATACATAAGATTCGAGAAAGATGAAATTAACATTTTGTATACTTAAGATTGCAATCAATTCTGTAATCTTTCAGAGAACTAGcacaaatacagacaaaataaatgccttaaattCTTAAGCTTTGGGGAAATGTCCACAAATATGGACCAAATGAAGGTTCTGTTGCTGTAATCTTTTAGAGAACTAGCACACATACGGACAAAATTAGCACTTTTAATCTGTAAGCTTTCAGAAAATGTGCACAAATACGGATGATATTAACGTTCCGTTTCTGTAAACTTTTAAAGAACTATCACAAATACGGACAAAATAAATGCTTCATATTCTTAAGCTTTCAGAGAATGTACACTAAAACGGACTAAATGAATGATCTGTATTTGTAAGATTTTAGAGAGTTAGCACAAAATACGGACAAATaacaacaagaaacaaacaCTCTGTTTCTGTAATCTTTCAGAGAACCAGCACAAATACGAAGAAAACCAATGCTTCATGTTCTTAATTTTTAGAAAATGTGCACAAATACGGATGAAATAAACGTTCCGTTTCTGTAATCTTAGAGAAAACTAGCACAAATAcggacaaaataaatgtttcaaattCATAAGCTTTTGGGAAATGTGCACAAATCGTAATCGTCGTAATGCGTCATTCTAAAGTCATaaaaggagtaaaaaaaaagtttgttctttattgtgttgtatttatTCATATCCTCGTAAGATTTCAGACACTGTGCACAAATACGGACAAATTAACTGCAGAGTTAATTTGTCCGTAAACGTTTGTAAAACTATTttctaaaagtttttttctggCTACACTGCACCCACACGATTTCTAGTGGCATTGCTCCATTCTGTTTTAACTGGATGTACACAAACATGGATTAAGGCAAAGCAAAGTATGGACAGAAGTCTTTGTCCGTATCCATATTCATACATAATAGCATTGAGCATGAATGAgcctttaattattatttttttctttgaactatcactatcactataaAACATACACTAGTACTGAAGTTCCATTTACTGAACCCACCATTTCCAATCTGAACTGaaataatgttataaaatgttctaaGCCATGCCTTTTGTGCGATTTTGTACATAGAAAGCCATGTTTCTGAGTGAACTATTGATCTGTTGATAGCTTATTTTGGTGTTTAGTGAAATATTGTGGATCTGAggcaaaaacattttgttctgtAACTTTAGACGAGCCAAACTCATCAACTTTCACTTGTCATTTCTACATTTGAAAGAAGCGGAGGACATCTTTCTCGACCAATACATTTTAGGGAGCCCAGTACggctatttttcatgttataATCATGATCGTAGCTCACTGTTCACACATCTCTGAGACACTCTGAGGCCTGATTCTCAAAGCTAATAGTTGTTAAAGccttttaatttgaaatcagTTGGTGAGCACTGGTGATATTTTTAGTTTGTAGCAAAATATTGGGTAAAAACATGTTATTGTAATATGCTGCGTTGCTAAAAAGCTTTGGAGCGGGCTAGCTataatgctaacagccagcttTGGCGCAGGGTAAGAGCTAAAATGCtggcagacaacgcagccaggcTTGAAAGATTTAAGAGGGTCAGCCATGATGCTTCTGCAAGCCAGCTTTCACAAGGGTAGAGCTGTGATTCTAATATACGCAGCAGCCGGGGCAGTGGGTAACCGCAATGCTACCAGCTGGTTTTGGCAGGGTTtgagctgcaatgctaacagacatgGCAGCCAGGTTCAGCAGGGTTGGGGAGGTGATTTAGCTGTGATTTAGCAGCCAGCCTCAGCAGAATTAGAACCAAGATGCTAACAGAAACTGCAAAAAGATTCTGAGGGCTTGAAGAGGTCTAGCCACTATGCTAACATCCAGTCTCAGAAGGGTTAGAGCCTTGCtgttaaaaaagaaactgtaGCCATGATTGGAAGGTTTGAAGAGGGTTAGCTCCTATGCTAAAAGCCAGTCTCGGCAGGGTTAGAGTTGCAATGCTATTAGATACAGCAGCCAAGCTTAGAAGGGTAGAGGAGGTTTGGCCACTATGCTAACAGCCAGTCTAACAGACAAATCAGCTGGGTTTGACAGGTTTAGAGCAGGATAGCCATTAAGCTATCTGTCAGCCTTGGTTAAGTTAGGGTTACATTGCTAACAGAAACCTTAGCCAGGCTTGAAATATTTGAAGAGGTTTAGCCTCTTTGCTAACAGCCAGTCTTGGCAGGGTTAGAGCCACGCTGCTACAAGAAACCATTGCCAGCTTTGGAAGGTTTAAAAGGTTTCAGTCTCAGTAAGGTTAAATTtgcaatgctaacagatacAACAGCCAGTCTTAACAGGGTTAGAGCCACGCTactccaaaaaaacattgccaGGCTTGGAAGGTTTTAAGGGGTTTAGCCACTATGCTAACAGtcagtctttgcaatgttagAGTTGCAAAGCTGTAAGACATAGCAGCCAGTCTTAGAAGGTTTAAGAGGTTTAGCCACTATGCTAACAGGCAGTCTTGgcagggttaaggttagggttaaggttagggttggagCCACGCTGTTACAAGAAACCATAGCCAATCTTGGAATGTTTGAAGAAGGTTAGCCACTATGCTTAAAGCCAGTCTCGGTAAGGTTAAATTtgcaatgctaacagatacAACAGCCAGTCTTAGAAGGTTTGAAGAGGGTTAGCCACTATGCTAACAGGCAGTTAAAGTTGCAATGGCCCTAAAGTTGCTCTAtattaaataagttaaatttTACCCACAGATATCACCAGAATTATGACAATTTAGAGCTCATTTTGATGATAACTGAAGCCCCCAGTTATGATTAAAGGTTATGATGGTTCTACATGTTTTGAGAATCTGGCCTCTGGTTCCTCTATCAGGTCCGTCAGGTATTTTCTGAATAGTTTCAGCTTTTTTGCTAATGAGCCGCGCTGTGTAAAGGAGAATCTGTTTATAGATTATTGTTACTGGTCTGATTCAGTTGTTACTTGTTAGCTTTTGATGTCACACTGATAACGGTACTGTTACAGAGATCACAAAGTGCCAAGACGAAGTGCTTTGTAACTGTATACATTCTGTATAAACCTCTATTTTGTAATGTAGAGGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07914 RAB37; Ras-related protein Rab-37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409342 lncRNA upstream 103018 5169353 ~ 5202662 (+) False G297634
TU409348 lncRNA upstream 126942 5178355 ~ 5178738 (+) True G297638
TU409343 lncRNA upstream 132900 5169428 ~ 5172780 (+) True G297634
XR_002649324.1 lncRNA upstream 188870 5112500 ~ 5116810 (+) False LOC111191036
XR_002649325.1 lncRNA upstream 188870 5112500 ~ 5116810 (+) False LOC111191036
TU409370 lncRNA downstream 16888 5361406 ~ 5403107 (+) True G297656
TU409381 lncRNA downstream 46802 5391320 ~ 5458441 (+) True G297658
TU409386 lncRNA downstream 51206 5395724 ~ 5398831 (+) True G297660
TU409374 lncRNA downstream 111700 5456218 ~ 5458441 (+) False G297658
TU409377 lncRNA downstream 112965 5457483 ~ 5458441 (+) False G297658
XM_022664989.1 mRNA upstream 35578 5229044 ~ 5270102 (+) True xylt2
XM_022664964.1 mRNA upstream 137165 5117585 ~ 5168515 (+) True recql5
XM_022664965.1 mRNA upstream 177425 5117580 ~ 5128255 (+) False recql5
XM_007237547.3 mRNA upstream 232497 5071404 ~ 5073183 (+) True gadd45gip1
XM_022665015.1 mRNA upstream 515997 4777511 ~ 4789683 (+) False nme4
XM_022665001.1 mRNA downstream 3857 5348375 ~ 5356879 (+) True LOC103026631
XM_022665081.1 mRNA downstream 70679 5415197 ~ 5451392 (+) True glis2
XM_022665083.1 mRNA downstream 312248 5656766 ~ 5666429 (+) True dnaja3
XM_022665056.1 mRNA downstream 357994 5702512 ~ 5711874 (+) False LOC103033323
XM_022665055.1 mRNA downstream 358036 5702554 ~ 5711874 (+) False LOC103033323
TU409249 other upstream 630161 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 871609 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1010494 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 1746229 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 2627403 2674748 ~ 2678277 (+) True LOC111191061
XR_002649334.1 other downstream 358036 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile