RNA id: XM_022664967.1


Basic Information

Item Value
RNA id XM_022664967.1
length 3438
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC103025262
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3704804 ~ 3766487 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAAGCTGATCGGTGGAGATAGGGTGGAGGGTGGAGGCTCGGTCTTGCGGTGGAAGCGCTTTATTCCGGGTTAAACATGGCAGAGGAGGACGATCATTACGGGAAACACGGTGAGCCCAGAAAATATGACCCCAACTTCAGAGGACCCATTCAGAACAGAGGATGTACAGACATAATATGCTGTATTTTCTTCATCTTGGCCATAGTGGGATATGTCGCTGTGGGAATAGTGGCATGGTCTCAGGGGGATCCCAGGAAGGTGATCTATCCCACAGACAGTATGGGACAGTTCTGTGGGCAGGTTGGAACTCCTCTGGAgaaAAAACCCTTCCTGTTCTACTTCAACATCCTGAAATGTGCCAGTCCTGTGGTCCTTGTGGAGTTTCAGTGTCCAACCACTCAGCTGTGTGTGGAGGAATGCCCCACTCGCTCCATGACCCTGGTGCAGGCCAAGGCTCCTGGAGGCGACTGGAGCTACTATAAAAAGTTCTGTAAGGACGTTTCAGATACAGAGACCGTTCCAAACATCTTGGCAAAGCGGCTGTGTCCTGCAATGCTCATCGCTAGCAAACCCTtcaCCCGGAGGTGTTTCCCAGCTCTGGGTCTGAAGGGCGATGAGGTCACTGTAGGAAATAAAACCACATTTAATGACGGACAGAGCGACAGAAAGGCCAGCGACCTCCTGCCTGCAGTGAAGAATGCCACAATAGTGATGGAAACTCGtctggtggtgatgaagatctTTGAGGATTTTGCACACTCATGGTATTGGATCGTTACTGGTCTGGTGATAGCAACTGTCCTGAGTCTGATCTTCATCGTGCTGCTGAGGTTCCTGGCTGGTATAATGGTCTGGGTCATGATTGTCCTGGTGATCCTCGTCATCGGATACGGAATCTTCCACTGCAGCATGGAGTACGTTAATCTGAAGAACGCCCCCGGTTCGAACGTCACCCTTAAGGAGCTGGGCTTCCAGATGGACCTGACTGTGTATCTCCACATCAGACAGACCTGGCTGGCTTTCATCATCATTCTGGCCATAGTGGAGGTGGTGATCATCCTGCTGCTCATCTTCCTCAGAAACAGGATAAGAATCGCCATCGCTCTCATCAAAGAGGCCAGCAAGGCTATTGGTCACGTGATGTCCTCCCTGTTTTACCCCCTGTTCACCTTCGCCCTGCTGGCTGTGGTTATTGCATACTGGGCCATCACTGCTGTCTTCCTGTCTACATCTAATGAACCAATATACAAAATCTTCAACATGGGCAATAAGGAGTGCATCTATGCAAACCAAACCTGCAATCCTGAGAACTACTCAAGGTCAGACATGAAGTTGGACTGCCCGGAGTCTCAGTGCCTTTTCGCTTTCTACGGCGGAGAATCCCACTACCACAAGTACCTCATCTTCCTCCAGTTCTACAAcgtcttcctcttcttctggtGTGCCAACTTCGTCATCGCCCTGGGCCAGATGACCCTGGCTGGGGCTTTTGCTTCGTATTACTGGGCGTTCAATAAGCCTCGTGACATGCCCACCTGCCCCGTGTTCGCCTCCCTCGGCAGAGCTCTCAGgtatCACACAGGCACTCTTGCTTTCGGCGCCCTCATCTTGGCAATCGTTCAGATAATCAGGGTTCTGCTGGAGTACCTGGATCACAAACTCAAAGGAGCTCAGAACAAGTTTGCCAAGTTCTTGCTCTGCTGCCTCAAGTGTTGCTTCTGGTGCCTGGAAAAGTTCATCAAGTTCATCAACAGGAATGCTTACATCATGGTGGCCATATATGGTAAGAACTTCTGCACTTCAGCCAGAGATGCCTTCTTCCTGTTGATGAGAAACGTGATCAGGGTGGCTGTTCTGGATAAGGTCACAGACTTCTTGCTGTTCTTGGGAAAACTCCTTATTGTGGGAATTGTggGAATCAtttcattcttcttcttctctggaAGAACGAAAGGACTGGATGTCGTACCCAATCTGCACTATTACTGGGTGCCCATTATGacgATTGCATTGGGCTCTTATCTAATAGCTCACGGCTTCTTCAGTGTGTATGGGATGTGCGTGGACACACTTTTCCTCTGCTTCTGCGAGGACCTGGAGCGTAACGATGGCTCTGCCGCCCGGCCCTATTACATGTCCAGCTCGCTGCGCGACATCCTCTTCAAGAACGTGGAGGATCCAGTCACCCGTTCTCCATCTTCACCTCAGGAAGAGGATGTCCCCCTGAGTACACGGAAGGAGTCCACGGAATGAGGCCGATGCACATTAGCGCTAAGCTGCCAGAAATCGTTTACTCTGAATCTGGATTTTTTGTTTCTGAAAAAAATGCAGTAGGGTTGCAGTGCATTAATTGAccataataatgataaacataattataaatGTGACTTATCACAGTGACCGATCACAGACTAATACATGTGCACTCGATAGTTGCTATGGGATTATAATGGGATTAAATGTCTGGAAATTAGTGCATTTTAGCTGTTTCtcagagctggattactcactgataTATGATGACAGCCTATAAATCCTGCAGTGGCAGGTTAGCTGTGATTCTCACAGTCAGGCTTAGCCAGGAAAAAGCTgcgatgctaacagctggcctCGGTAGGCTTGGCGTgttttagctgtgatgctaactgtttttccAAGCTGGATTACTCTCTGATCGTTTGTGAGATCTACAACTTTCTGCTGAGTCGAGTCACTGCAGACCtctaaacttcatgtagcttcagaatttAATGGAATGGGTTTCAGTGGCCGAGCAGATCCATCCAAGCCTTACGTCACATATAGTTTAACATCTTTCTTATCCAAATATGGGCTCTGTTTCCAAGCAAGTTGTACCCTAAGGGAAGTGCTACTTCATGGTCGATTTACTTGCACTATCCCGTGTCTTTTggcttttggcatgtctgtgtagaGAGAGGGGTTTTTGTGGTGTAACTGTCTTTCTGATTGTGAAAGCAATTTAGGGATAAGCTGAAACTCAagctagttttatttttatttcgttttttcgatgaatgttttacttttaaattaatttaacagaAAGTAGCATTATTTAAGCAAATCTATTCTGAATGTCACTGGCAGAATATCGTATGTGCCTCATTCTTTTACAAAATTCATAATAGAATTAAATTCTAGTCTAAATGCTgtgttttatgctgtttttttttttaataaatctgcCAACCctccattatttttttcctcatatACTGCAGTAGTATTGCGATGGCTGCACTTTATCCAGTTCTAAagccttaaatacctttttgcCTTGAAATGCATTGACTATCTTGAGTCACACACCGCACTAAGTAATGTCTTTTAGCTGAtctctcctcttcttttctcaatTCTCTGCCTGTTTGGACTGGTGCCTTTTCAATCTGTCTATTAAAGATTCTTTCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408865 lncRNA upstream 19559 3693698 ~ 3697530 (+) False G297318
TU408866 lncRNA upstream 19559 3693698 ~ 3697530 (+) True G297318
TU408867 lncRNA upstream 19559 3693698 ~ 3697530 (+) False G297318
TU408868 lncRNA upstream 19559 3693698 ~ 3697530 (+) False G297318
TU408849 lncRNA upstream 52510 3661243 ~ 3664579 (+) True G297303
TU408943 lncRNA downstream 16159 3777906 ~ 3783928 (+) True G297369
TU408936 lncRNA downstream 65021 3826768 ~ 3830199 (+) True G297367
XR_002649338.1 lncRNA downstream 104193 3865940 ~ 3886107 (+) True LOC111191051
XR_002649339.1 lncRNA downstream 111871 3873618 ~ 3886107 (+) False LOC111191051
TU408956 lncRNA downstream 124952 3886699 ~ 3888763 (+) True G297377
XM_022665062.1 mRNA upstream 65754 3645713 ~ 3651335 (+) True LOC111191046
XM_022664990.1 mRNA upstream 96262 3596527 ~ 3620827 (+) True farsa
XM_007241957.3 mRNA upstream 121718 3574725 ~ 3595371 (+) True ilf3
XM_007241959.3 mRNA upstream 125686 3574633 ~ 3591403 (+) False ilf3
XM_022664970.1 mRNA downstream 14776 3776523 ~ 3825640 (+) True LOC103046751
XM_007238231.3 mRNA downstream 318402 4080149 ~ 4159462 (+) False LOC103038737
XM_007238229.3 mRNA downstream 318402 4080149 ~ 4159462 (+) False LOC103038737
XM_007238232.3 mRNA downstream 360773 4122520 ~ 4159462 (+) True LOC103038737
XM_022664963.1 mRNA downstream 491269 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 157638 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1038812 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2355154 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 2516301 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 3676198 36851 ~ 40891 (+) False LOC103026352
XR_002649321.1 other downstream 491269 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 658250 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 888896 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1940807 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile