RNA id: XM_022664974.1


Basic Information

Item Value
RNA id XM_022664974.1
length 3783
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC103025443
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3228458 ~ 3326996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGGCAGTGACGGACTTTAGGCAGTAGGGTGTTCAGCTCCCTAGTAGCAGTGTCTCCCTCTCTGCTCAACTTTTCCCCCAGGCTTATACTCAGTCCTCCTCACTGAATGGGCTCAGGAGAGGCGCGTACAGCTCCATCAAACCCGATACTCCGTTTTAAACCGATTTATCACCGTCTAAACAGCTTTTTAACCTGAGAAAACTGCACGTAGCTAGTGTAGAGAGTGAGTGGACATGGCTCCAGCAGCGGCTCCGTGCACATCCGGGCCACAGCGCAGCGCCTCCATTATTATTCCCAGCTCactgtgagtgagagaaagcggcCAGGCTGGCTCAGCGCAACGAGCAGAAAACgggcaataaaaaacaaaccgGGGCTTTAACACGGGATTTCTCCGACCAAGCTGGAAAGATAAGGGACATGTCTAATCAAGGGGGAAGGAGAAACGGGCCTGTGAAGTTGCGTTTAACAGtgctgtgtgcGAAGAATCTGGCGAAGAAAGACTTCTTTCGCCTGCCTGACCCCTTTGCTAAGGTGGTGGTGGACGGTTCCGGGCAGTGCCACTCCACAGACACAGTCAGAAACACTCTCGACCCCAAATGGAACCAACACTATGACCTatACATCGGGAAGTTGGACTCCATCACTATCAGTGTTTGGAACCATAAGAAGATCCACAAGAAGCAGGGCGCCGGCTTTCTGGGCTGCGTACGGCTCCTCTCCAACTCCATCAACCGCCTCAAAGACACTGGCTATCAGAGACTGGACCTCAACAAGTTGGGACCCAATGACAGTGACACCGTGAGGGGCCAGATAGTAGtGAGCCTGCAGTCCAGAGACAGAATCGGAAGTGGTGGGCCGGTGGTGGACTGCAGTCGTCTGTTTGATAATGATCTACCTGATGGctGGGAGGAGAGGAGAACTGCATCGGGTCGAATCCAGTACCTGAACCACATCACACGCAGCACGCAGTGGGAGAGACCCACCAGGCCGGCATCAGAGTACTCGAGCCCCGGTCGGCCGCTCAGCTGTCTGGTGGATGAGAACACTCCCATTATGACCCCTAATGGTGCAGCAGGTGTGCAGGCTGGTGACCTGCGGGTTCAGGAGAGGCGCGTCCGCTCCCAGAGACACAGAAACTACATGAGCCGAACTCATCTCCACACTCCTCCAGACCTACCCGAGGGCTACGAGCAACGGACCACACAGCAGGGTCAGGTGTACTTCCTGCACACCCAGACAGGAGTCAGCACGTGGCACGACCCCAGAGTACCCAGggaTCTGAGTAATGTGAACTGTGAGGAGTTGGGACCTCTGCCTCCAGGCTGGGAGATCAGGAACACAGCCACAGGCCGGGTTTACTTTGTGGACCACAACAACAGAACCACGCAGTTCACTGACCCACGACTCTCGGCCAACCTGCACCTCGTCCTCAATCCCAGTCCTAATGGTTCCCGTAGTGCAGGCGAGGCTCCAAACAGgaAAAAACTGTCCCTAAATATAGAGCTCAGGTACTACCTGACCCTACCTACTGAATCATACCGCCAAGTGATGAAGATGAGGCCAAAAGACTTGTGGAAGAGGCTGATGGTGAAGTTCAGAGGCGAGGAAGGTCTGGACTATGGAGGCGTGGCCAGGGAGTGGCTGTACCTCCTCTCTCACGAGATGCTGAATCCATACTACGGGCTCTTCCAGTACTCACGAGATGACATCTACACTCTACAGATCAATCCAGACTCCGCCGTTAACCCGGAACACTTGTCCTACTTCCACTTCGTGGGCAGAATAATGGGCATGGCTGTGTTCCACGGCCACTACATCGATGGCGGCTTCACCCTGCCCTTCTACAAACAGCTGCTGGGCAAACCCATCACCCTGGATGACATGGAGTCTGTGGACCCTGACCTCCACAACAGTCTGGTCTGGATCCTTGATAATGACATCACAGGAGTGCTGGACCACACGTTCTGTGTAGAACACAACGCCTATGGGGAGATCATTCAGCATGAGCTCAAACCCAACGGCAAGAGCATCCCCGTCACCCAGGATACCAAAAAGGAATATGTCAGGCTTTATGTGAACTGGCGGTTCCTGAGAGGCATCGAAGCTCAGTTCCTGGCTCTGCAGAAAGGCTTCAATGAGGTCATACCACAACATCTGCTCAAGGCCTTCGATGAGAAAGAGCTTGAGCTGATTGTGTGCGGCCTGGGTAAGATCGACATAAACGACTGGAAGTCCAACACGCGGTTGAAGCACTGCACGCCCGACAGCAACATTGTGAAGTGGTTCTGGCGAGCTGTGGAGTCGTTCGATGAGGAGCGGAGAGCTCGACTGCTGCAGTTCGTCACCGGCTCCTCCAGAGTGCCGCTGCAAGGCTTTAAAGCCCTACAAGGAGCTGCAGGCCCACGTCTCTTTACCATCCATCAGATTGACGCCAACACCGACAACCTGCCCAAGGCCCACACATGCTTCAATCGCATCGACATTCCTCCATACGAGCTCTACGACAAGCTCTATGACAAGCTTCTGACAGCCATCGAGGAGACCTGCGGGTTTGCTGTGGAGTGATTGCGCTTGCGTTTGGAGGATGAGCCGCTTAGTGGGAGGAGTTGACCTGTCACTCGGGCCCAGATGGGGCGTGGCTTATGGTGCAGCAGCACCGCCCCTGTCATCAGAAGCAGGGAAAGGAGTAGGAGGAGTAAGAAGATGAGGGGGAACAGATGGAGTATCCTGCAGCATTCTATGCCTGATATGGGCTTTTCTCTGCATCCCTgcgtattttattattgtttttttttttttattattgttttttttattcaagagAAGAATGGACTTTTTCAGCTGCTAGTAACTCagactttttgactttttatCGTTTTTTGGAACATACAGCATAAAAACTACGGCTCTTCCtcttctgcttttctttttatagcattaatgaaacaaacaaaaaaagatatagaCAGTATTTCATGTAGCGTCTGTACCAACAACTGACTGAGGGAAAAGGAGGGACACTGACGGGATGCTGTGCTAACAGAGCATTGCTGCATAAGCTAACATAAGAGTAGCACTACTGCCCTTACTACAGATAAAacgacgagacgagacgagacgagacgagtgGAAGACGCAGATCAGTGACGCAGAAGGAGACTAAAAGCAGTTGCGTTTCTTGGTCACGTGGACTTGGAAGCCCTCGTGGTAGCAGGCCCTGTTCTTCTGAAGTAGTGGACGTATGGTGGACCTTTGGGGCCCAGATATGCCCTTGCAATCTACAGGGGCCCTGTGATAAAGGCACCTGTTAAGGGCCCTAGTATAAGTGCCCTACTATCCACTGTTCAAAGCCTGTAGACACCAGGAACCATCCTAACTACCTGTGCTCCATTCCGTAAGAGCAGTCTCATCAGCGGTCTGATGTATAAGCTTCTTTAAACtgaattgaatgaatgaatgaaagattgcttgatagatagatagatagatagactgactgattgattgattaattgattgattgattagttAGATTAGGTAGGTTAGTGATATTTTTATATGACGCAGGGTTGTGGGGGGGGAGGGGTAAAACAGAGAAATGAACAaccaaattattattgttatagaTCTATAATTTATTACCCTTATTGCAGAAAAACGTGTTGCAtccagagcaaaaaaaaagaaaaaaaaaacacgaaagaAGAATTTATGCATTATGCATTGCTTTGTCTAATGgatgatttatattttaagtttctcacagaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0045121 membrane raft cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K04678 SMURF; E3 ubiquitin ligase SMURF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408687 lncRNA upstream 9849 3217671 ~ 3218609 (+) False G297190
TU408688 lncRNA upstream 9849 3217671 ~ 3218609 (+) True G297190
TU408689 lncRNA upstream 9849 3217671 ~ 3218609 (+) False G297190
TU408592 lncRNA upstream 80163 3042432 ~ 3148295 (+) False LOC111191028
TU408584 lncRNA upstream 192844 3034512 ~ 3035614 (+) True G297128
TU408739 lncRNA downstream 19098 3346094 ~ 3375734 (+) True G297214
TU408750 lncRNA downstream 21746 3348742 ~ 3410812 (+) True G297217
TU408751 lncRNA downstream 84260 3411256 ~ 3412085 (+) True G297218
TU408833 lncRNA downstream 239426 3566422 ~ 3640614 (+) False LOC103030733
TU408832 lncRNA downstream 239879 3566875 ~ 3584353 (+) False LOC103030733
XM_022665047.1 mRNA upstream 1287 3219929 ~ 3227171 (+) True LOC103025752
XM_022665034.1 mRNA upstream 12269 3165049 ~ 3216189 (+) False LOC103026062
XM_007239581.3 mRNA downstream 5883 3332879 ~ 3342234 (+) True LOC103024726
XM_007239580.3 mRNA downstream 5883 3332879 ~ 3342234 (+) False LOC103024726
XM_022665079.1 mRNA downstream 19449 3346445 ~ 3357240 (+) True LOC111191052
XM_022665093.1 mRNA downstream 35438 3362434 ~ 3403563 (+) False LOC103038127
XM_022665092.1 mRNA downstream 35438 3362434 ~ 3403563 (+) False LOC103038127
XR_002649344.1 other upstream 550181 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 1866523 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 2027670 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 3187567 36851 ~ 40891 (+) False LOC103026352
TU408827 other downstream 223348 3550344 ~ 3559451 (+) False LOC103030733
XR_002649321.1 other downstream 926020 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 1093001 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 1323647 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 2375558 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile