RNA id: XR_002649326.1


Basic Information

Item Value
RNA id XR_002649326.1
length 2284
RNA type misc_RNA
GC content 0.56
exon number 11
gene id znf653
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4419997 ~ 4434071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGAAACACAACAGCTGCAGCTGGGTAAAGATGGCGACTCAGTGTGGGGGTAAGGCGGACAGCCTGGGCTCCGGGAGCTCCAGCGGCTCCGGGGAGCAGATTAAAGCTATGCTGCGGCGCTGCAGGGGTCGGCCCCGGCTGTCGGACTCGGACCGAGCCCAGAGGCGCCTCGAGTCGCGGAAGAAGTACGACGTTCGGCGGGTTTACCTCGGAGAGTCGCACCGGATCTGGAGCGACCTGCGGCGGCGGAGCAGCCTGAGCGACGCCGGACTCGCCGAGTACCTGATCCTGCTGAACTCCGCCTACGGAGAGCGGTACCAGCGGAGACACGCAGCGCACGGCCACCAGAAGAACAACATTCCAGAGCTGTGCAAAAATCAGAAGAAAGGAAAGAAGGTGGCCGTCACCAGCCTGCACAGTTTAGTGAGCTGGTACCAGGAGCACTGCCAGACCTGTCCTCATGAGCCTGAACTGCGAGCTGTGGAGCCGACGCTGGGTCTGTCCACCTCTGTTCTCTGGCAGTGTGAAGCTGAGCATTCCTTCATACAGCACATATCGTGGCCTGCGGGAGGTGCTAGTGaatcagaggaggaggaggaggaggaagaggaggatgaagctACAGAGGAGCCGGAGAAAAACAGAGCTGCTGAGACACCCACAACAGGTGTGCGCATCAACACAAGGGCTAGCCGAAGAGCTGTGAACCAAACTCAGCTGACAGATGCAGCAGAAGAGTTGGAGAGCGCCACGACGCAAGTATCAGAAGTGTCCCATCAGATGTCCTCCACAGCTCTCGCTCAGCTCCCAGGAGCTCCCTCCTCGCTGGGGAACCAGGCCTCGTGGGAAGTAGGGGTGGGACCAGAGGGGGAGCCGATCATGTCCGAGTCGGGAAACGAAGCCTCAGCTCAGGACTTGACAATAGAGAGCTTTCCTACAGAAGAGGCAATCGACCTGAAGACTGAAGGTAGAGGGAGGGGCGGAGTCAAGACTGAGAATTACGAGTGTGTGGTGGTCTCTGCGTCTTTGATGGAAAACGTAGAGGAGGGTTCAGACCATGAAAGAAGGTGTGTGGAGGTGGGCGGAGCTCACACTCTCTCGGAAGGTGTCGTTCGTGCACCGATGGCAGTAGCCCCGGTGCAGGGAGAGCTGTACGAGACCCAGACACTACAGAACATGGTGGGCACCTGTGACCTGCCGGGCCAGCGGGCCACACTGGAGGCATCTCAGGTTGGTGACTTAAAGCTGATCATCATCACAGGACCCAGTTATGAAGCTCTGACCTCTGAAGGCATCCAGCTCAACGTGGGAGGTGGAGGTGTGGAGGAGGTCACCTGCACAGTTATTGATGGAGTGGCTTACAACCAATTGTGCCAATCAGGAGCCGTTCTCCAGAGCAGCGTCCCAGAGACTGATAACATCATAGACCtgagtgagaagcagcagctgtTGGAGCCGAATGACGAATCGCACAATCAGAAAGATCTGCAGCGTTCTCCCAACAGATCTTCTAAGAGAAGTCGACGGGGGCCAGTGATCGAGGCAGACGGCATGCTGAAGATGTTTCACTGTCCGTATGAAGGCTGCAGTCAGGTGTATGTAGCAATCAGCAGCTTCCAGAACCATGTAAATCTGGTGCACAGGAAAGGCAGGACGAAGGTGTGTCCGCATCCCGGCTGCGGGAAGAAGTTCTACCTTTCTAACCACCTACATCGTCACATGATCATCCACTCAGGAGTGCGAGACTTTATATGTGAGACCTGTGGCAAGTCCTTCAAACGTAAGAATCATTTAGAGGTGCACAGACGCACTCACACAGGAGAGACGCCGTTACAGTGTGAAATCTGTGGTTATCAGTGTCGGAAGCGCGCCTCCCTCAACTGGCACATGAAGAAGCACACCCCCGAGGCGCACTACAACTACACCTGCGAACACTGCGGCAAGCGCTTCGAGAAGCTCGACAGCGTCAAATTCCACAAACTCAAGAGCCACCCGGACAAACAGACTACCTGAGAGCGAGGTTTATCTGGAAGACAGATATCTATATAGAAACGGCTTTGCTGCACATGGCGGGCGACGGGAATGGGGAATGGCTTCTGCTGGCCAGCACTGGTTGTCAGAGTTTCCTGTTTGTGCTCttagttttgtgtgtgttaacagtttaaacatgctaattggctgtttctccagcCTGAGTGTTGGCTTAAACAGGAGGTGGTGCCAGAGGAGATGTGCAAGAGGAAAATGAGCTGGACCAGAACCAGGAAAACGTGAAGGTAGAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409209 lncRNA upstream 1228 4417976 ~ 4418769 (+) True G297529
TU409188 lncRNA upstream 64033 4352653 ~ 4355964 (+) True G297516
TU409158 lncRNA upstream 120550 4254206 ~ 4299447 (+) False LOC103041102
TU409159 lncRNA upstream 120550 4292357 ~ 4299447 (+) True LOC103041102
TU409161 lncRNA upstream 120550 4292357 ~ 4299447 (+) False LOC103041102
TU409212 lncRNA downstream 1995 4436066 ~ 4436423 (+) True G297531
XR_002649320.1 lncRNA downstream 6273 4440344 ~ 4443094 (+) True LOC111191027
XR_002649336.1 lncRNA downstream 24384 4458455 ~ 4475326 (+) False LOC111191048
XR_002649335.1 lncRNA downstream 37967 4472038 ~ 4475326 (+) False LOC111191048
TU409220 lncRNA downstream 38029 4472100 ~ 4477769 (+) True LOC111191048
XM_022665107.1 mRNA upstream 5306 4401640 ~ 4414691 (+) True epor
XM_022665106.1 mRNA upstream 27131 4367718 ~ 4392866 (+) True LOC103038197
XM_022665104.1 mRNA upstream 27131 4377110 ~ 4392866 (+) False LOC103038197
XM_022665078.1 mRNA upstream 56393 4356987 ~ 4363604 (+) True tmem205
XM_022665057.1 mRNA upstream 73400 4323111 ~ 4346597 (+) True cnn1
XM_022665080.1 mRNA downstream 52833 4486904 ~ 4508485 (+) True LOC103021497
XM_022664991.1 mRNA downstream 77338 4511409 ~ 4598805 (+) True LOC111191035
XM_022665002.1 mRNA downstream 275393 4709464 ~ 4711739 (+) True LOC111191037
XM_022665071.1 mRNA downstream 292616 4726687 ~ 4732562 (+) True LOC103025123
XM_022665110.1 mRNA downstream 300597 4734668 ~ 4770755 (+) True xpo6
XR_002649321.1 other upstream 124811 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 860546 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1741720 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 3058062 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 3219209 1191763 ~ 1200788 (+) True G296679
TU409249 other downstream 216572 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1268483 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile