RNA id: XM_022665057.1


Basic Information

Item Value
RNA id XM_022665057.1
length 1410
RNA type mRNA
GC content 0.52
exon number 7
gene id cnn1
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4323111 ~ 4346597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGCTGCGAGGCGCCTCCTAACGCACGAGGACAGGAGTTACCAGTGTTTCCTTCTGCACGAGCTCCATCAACCCCCCGCCCGCACGCGCTCaggctactactactactgtccGCGCTCGTGCTCCGTTCAGCTCGACCTCAGTATGGCACAGCAGCACTTCAGGAGCGGCCCGGCCTTCGGTCTGTCCGCAGAGGTCAAGAGCAAgCTGGCCCAGAAGTACGACCCCcagaaggaggaggagctcAGGCTGTGGATTAACGAGGTGACGGGACGCAAGGTTCCAGACAACTTCATGGAGGGCCTGAAGGATGGAGTCACCCTCTGCGAGCTTATCAACGCTCTCCAGCCCGGCACGGTGAGAAAGATCAACAACTCCTCTCAGAATTGGCACCAGCTGGAGAACATCGGGAACTTCGTCCGGGGAATCCAGGAGTATGGCTTAAGGCCACATGACATCTTCGAGGCCAATGACCTGTTTGAGAACGTCAACCACACTCAGGTTCAGAGCACCCTGATTGCTCTGGCTGGGATGGCCAAGTCCAAAGGCCTCCGCACTAAATACGACATCGGGGTGAAGTACGCCGAGAAACAGCAGCGCAGGTTTGCCCCCGAGAAACTGAAGGAAGGACGCAACATCATCGGCCTGCAGATGGGAACCAATAAGTTTGCCAGCCAGAAGGGAATGACATCATACGGCACACGGCGTCACCTGTATGACCCCAAAGTTGGCATGGAGAATCCCCTGGACCAGTCAACAATTAGCCTGCAGATGGGAACCAACAAAGGAGCCAATCAGTCTGGAATGACCGCACCCGGCACCAAGCGCCAGATCTTTGATAAGAAGCTGGACATGGAGAGCTGTGACACCGCCACCGTCTCGCTGCAGATGGGCACCAACAAGGTGGCGTCTCAGTCCGGCATGACGGTCTACGGCCTCCCGCGCCAAGTCTACGACAGGAAGTACTGCACCTACTCCGAAGACTACATGGACAACGGCCAGGACGTGCGGGAGATTGATGGATACCAGTACTCTGATTAAGCCACATGGACTGCTATCCCACACACTGCTTtaattcttctgttttttttttctttatttcacttACTGTtgcttttaaaatttatttaaaagtcgAAAAAACACGAAAAACGCCCAAACTGTTGCCGTAGCAACCACGACCAACCACGACCAATCACAACCAACCAACCGAAGGTTGACCAAAGCTGAAGCGTAGGTCTGCTATGGCTGATTAGTTTTGCCACTGGCTGCTAATATTTCTGCTTCTCACTCAGAGTAGATgttataaaattttatattttttatttttgagtattTGAGTTTGTAGCAGCCTCTTCTCACCTGATTTGCATGACTTGCATTCTGTttacaggaaaaggaaaaaaaaaa

Function

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409158 lncRNA upstream 23664 4254206 ~ 4299447 (+) False LOC103041102
TU409159 lncRNA upstream 23664 4292357 ~ 4299447 (+) True LOC103041102
TU409161 lncRNA upstream 23664 4292357 ~ 4299447 (+) False LOC103041102
TU409157 lncRNA upstream 27504 4292357 ~ 4295607 (+) False LOC103041102
TU409152 lncRNA upstream 47288 4215295 ~ 4275823 (+) True G297497
TU409188 lncRNA downstream 6056 4352653 ~ 4355964 (+) True G297516
TU409209 lncRNA downstream 71379 4417976 ~ 4418769 (+) True G297529
TU409211 lncRNA downstream 84736 4431333 ~ 4435857 (+) True G297530
TU409212 lncRNA downstream 89469 4436066 ~ 4436423 (+) True G297531
XR_002649320.1 lncRNA downstream 93747 4440344 ~ 4443094 (+) True LOC111191027
XM_022664963.1 mRNA upstream 27925 4253016 ~ 4295186 (+) False LOC103041102
XM_007238231.3 mRNA upstream 163649 4080149 ~ 4159462 (+) False LOC103038737
XM_007238229.3 mRNA upstream 163649 4080149 ~ 4159462 (+) False LOC103038737
XM_007238232.3 mRNA upstream 163649 4122520 ~ 4159462 (+) True LOC103038737
XM_022664970.1 mRNA upstream 497471 3776523 ~ 3825640 (+) True LOC103046751
XM_022665078.1 mRNA downstream 10390 4356987 ~ 4363604 (+) True tmem205
XM_022665106.1 mRNA downstream 21121 4367718 ~ 4392866 (+) True LOC103038197
XM_022665104.1 mRNA downstream 30513 4377110 ~ 4392866 (+) False LOC103038197
XM_022665107.1 mRNA downstream 55043 4401640 ~ 4414691 (+) True epor
XM_022664995.1 mRNA downstream 73400 4419997 ~ 4434071 (+) True znf653
XR_002649321.1 other upstream 27925 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 763660 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1644834 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2961176 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 3122323 1191763 ~ 1200788 (+) True G296679
XR_002649326.1 other downstream 73400 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 304046 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1355957 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile