RNA id: XM_022665062.1


Basic Information

Item Value
RNA id XM_022665062.1
length 995
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC111191046
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3645713 ~ 3651335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctggatatttttgttggacctgacctggcaaccctggccgTTACTGAGCTGCGTCGCGTGCGGTTGTGGAGACGGTTGGAAATGCTAGGCTAACTCCAGCACGGAAGGTCATGGCTCAGCACTTCTTTGGACACCCTGGCTCCGCTACATTTCAGTCCACACCTAAAGCAGGTCCTCAGCGTGTCCCAGTGAAGgCGGCAGAAGAGGGGCAGAACATAGACTACGACTCGACAGGTGAAACACTGTCATTTGTAACCCTGGATGATAGTCATGAGCAGCAAAGTGAGGATTCAGGCATCAACATATCAAGTAGAAGTTCACCTGTAACTGTTCCCGTGGATGATAGCATTGTTTCCAGCCCTGTTGCTTCAAGAATAGATGAGATTGGGAAGAAAGCGCAAGATCTTATTGAAAGGATCAACCAGAGCAGAGCCATGGATCAGAAGATCTTAAACAGCTTTGAGGAAAAGCTAATGCAGAAGGTGGGTGAGATGTGTCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGATAAGCACAGTCAGGGGATGGAGGTCAGGCTCACTGAACTATCAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTGCAAGGAGCCAGCCAGACACTGGCAGCCATCAACAAAGGTCTGCAGCAAACGGGTCAATAgattatatattactatattgcTCATAATACTTCCACAGCCCTGTCTACCTTAAAGCCATGATATGCTAATCTACATTGAAATTATATAGAAATGGTTTGGATTGTTATTATGGGATGACAACAGCGTACTATTGATTTAATGTATCTAGCAAATCTCGTCAGTGAAAAGATGGGATTctctaaataatttacaaagaTAAGATTTCTTGGCCAGAGGTCTGATAGATTGACATCAGAAAATAGAAtttaaatctacacagtttGCAAGGCAGACTTGTCAGCATAGCAGCTAAAAGACGAATATAAAAGATGTACGAtgta

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408833 lncRNA upstream 5099 3566422 ~ 3640614 (+) False LOC103030733
TU408832 lncRNA upstream 61360 3566875 ~ 3584353 (+) False LOC103030733
TU408751 lncRNA upstream 233628 3411256 ~ 3412085 (+) True G297218
TU408750 lncRNA upstream 234901 3348742 ~ 3410812 (+) True G297217
TU408739 lncRNA upstream 269979 3346094 ~ 3375734 (+) True G297214
TU408849 lncRNA downstream 9908 3661243 ~ 3664579 (+) True G297303
TU408865 lncRNA downstream 42363 3693698 ~ 3697530 (+) False G297318
TU408866 lncRNA downstream 42363 3693698 ~ 3697530 (+) True G297318
TU408867 lncRNA downstream 42363 3693698 ~ 3697530 (+) False G297318
TU408868 lncRNA downstream 42363 3693698 ~ 3697530 (+) False G297318
XM_022664990.1 mRNA upstream 24886 3596527 ~ 3620827 (+) True farsa
XM_007241956.3 mRNA upstream 50342 3574633 ~ 3595371 (+) False ilf3
XM_022664968.1 mRNA downstream 53469 3704804 ~ 3761747 (+) True LOC103025262
XM_022664967.1 mRNA downstream 65754 3717089 ~ 3761747 (+) False LOC103025262
XM_022664969.1 mRNA downstream 65755 3717090 ~ 3766487 (+) False LOC103025262
XM_022664970.1 mRNA downstream 125188 3776523 ~ 3825640 (+) True LOC103046751
XM_007238231.3 mRNA downstream 428814 4080149 ~ 4159462 (+) False LOC103038737
TU408827 other upstream 86262 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 967436 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2283778 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 2444925 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 3604822 36851 ~ 40891 (+) False LOC103026352
XR_002649321.1 other downstream 601681 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 768662 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 999308 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 2051219 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile