RNA id: XM_022665070.1


Basic Information

Item Value
RNA id XM_022665070.1
length 3282
RNA type mRNA
GC content 0.51
exon number 30
gene id LOC103045206
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1497029 ~ 1545937 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCAACACCAGGCTGCAGATATCGTACAGATAGATGATTGTGACACTatgaacactcacacacacccagtgATGAGCAGAAACAGCTTCTGAGCGCTGCTGGAGAAGATGGAGGGAGTGAAAGACACAGGCCTGCTCATCTTCActctgtgtttagctgtgtttagTATCGTCCCGCATCAGAGCAGCAGTTTTAACCTGGATCTGGAGAACTACAGTGAACACAGCGGACCAGAGGGAAGCTACTTCGGCTTCTCTGTGGACTTCTTTGaagcaaacaataaaaaTGTGAGTGTTGTGGTGGGCGCACCCAGAGATAACGTAGGAGCTTCCCCGGGAGGATCTGTCTTCATCTGTCCGTGGACGTCAACACAAGGTCCCTGTCAAAGACTGGCCTTTGACCAAACAGGTGATGAAAACTTCACATTTGGAGACATGCTCCTCATGAGCCATAAATCTGACCAGTGGCTGGGGGCCACAGTGAGGGCCTACAAGAGTTCCATCTTGGCCTGTGCTCCCCTGTTCCACTGGAACGTGGTTCAGGGCAAAGACGAGGCCATGAACACACCAGTGGGGAACTGCCAGCTACTGGACACACTGACTGGAAATTTAGCCAACTACGCCCCCTGTAGGGGAACTGCAGTGGAGGAAAGCTACACTAGAGCCAGGAACTatcaGGACAGACGCTACTGTGAAGCAGGCTTCAGCTCTGATGTCACTAAGGACGGTACTGTGGTGCTCGGGGCTCCAGGAGGCTTTTTCTTCCAAGGTCAGATCATCACTGCACCTCTCCAAAAAATCATGGCCAGTGGCAAAACCTTCAGTCCGATCCACTATCTGGTGGGAGAGGCTAAGTCACCGGAGAGATACCACCAGTACGACGTTTATCTGGGTTACTCTGTTGCAACAGGCAATTTTAGTGCTGGCAGTTCTCCAGACTATGTAGTTGGAGTGCCAAATGACTTGAATACAATTGGTTCTgttaaaatCTTCTCTGGATCTGCAGTTACCCTTACTGCCAAGAAGAGTCTCAAAGGCTCTCAGGTAGCTTCTTATTTTGGCCATTGTGTTGCTGTGACTGACATCAACAGTGATGGGAAGGATGATATCTTGGTTGGTGCTCCACTCTTTATGGAGCTCCTGCCCAGTCAGAAACTGAGGGAGGTGGGCCAGGTGTACGTTTACCTGCAGAAGGAGGGTTACAACATCTCACCTGCACCTGATCAAACCCTGACAGGCACTAAAACCTACGGTCGCTTCGGCAGCACCATCGCTCCTCTGGGAGACCTGGACCATGATGGCTTTAATGACGTAGCTGTGGGAGCTCCAGGTTCTGGAGAAGGGGGCTGGGTGTTCATCTACATGGGCCAAAGTGATGGTTTAAACCCCCACAACATGCAGGTCATCGAAAGCCCCTTCCAGCCTCCAAAACCAGCAGCAGCTTTCGGCTTCAGCTTGAGAGGAGGAACAGACATAGACGGAAATGGATACCCAGATCTAATCGTTGGTGCATGGGGAGCTGACAAAGTGGTAGTGTACAGAACAAAGACAGTAGTGAAGACCAGACCAACGCTTTCCTTCTTCCCTGATTTTCTAAATCCTGATGAAAAGCTCTGTGAAGCGGATGGCACCCTGGTTTCCTGCTTTAGAATTGAGATGTGCATCAGTGTGTCTGGCTACAAAATACCAGAGGAAATTGTGCTGAACATGGAGATACAGCTGGATAAGCTGAAGCCGACTATGGCCAGAAGGACCCTGCTGATGGAGGGTCATCAGCCACACAGCCAGTTCCAGCTCTCTCTTAACAGAGATACAGGAGAGGTCTGCAAGAACCTCACTGCTTACTTAGTGGCGGAGTTCAAGGATAAACTGAGCTTAATCCTCATCTCACTCAACTACAGTCTGGCGAACTCCAGCGGGGCTATGCTGCACGAGCAGAGTGGCATAGTGGGCCAGACACAGATTATTCTAGACTGTGGTGAAGACAATGTGTGCATTCCTGACTTGAAGTTGGCTGCCGAGGCAGACAGACAGCCTCTCCTAATTGGAGATGAAAACCCGGCTCTCCTCATCGTTAAGGCGGAGAATCGGGGGGAAGGGGCGTATGAGACAGAGCTGCATGTGCGTCTGCCACCCAGAACACACTATCAATCTGTGCTGAGTAACAAGGAGGGCTTCACTCGGCTACTGTGTGCTCCAAAAAAGGACAACGGGTCAGTTATCGTGGTGTGTGACTTGGGCAACCCAATGAAGGCTGGCCAGAAGCTCCAGGCAGGTCTATTCTTCAGCATGGGTGGGCTGGACGAGGTCGAGACCCATGTGTCCTTccatttacaaattaaaagTAAGAACAGTAAGAACCCAGACAGCAACCCAGTGGAAGTTCGGATTAATGTGCAGGCTGTGGCTTCTCTGGAGATGCGTGGAGTGTCTTCTCCCACTGAATGCGTCCTCCCCATCGCCAAATGGGAGCCGAAGCCTTTTCCACAGGATCTGGAGGATGTGGGTCCACTCATAGAGCATGTGTATGAGttaagGAACAAAGGGCCCAGTCCAGTGAATGCCAGACTGCAGCTGCATTTCCCAGTACAGCAGAATGGATCCTACCTGCTCTATGTGTTTACCAGCGCATCCGAGGAGCTGCTCTCCTGCAGCACCAACTACAGCATCGATCCACGGGGGTTAGTGAAGACAGAGTCCACGAACATTACTGAGGACATTATTCACCATCTCAACAAACGGGACGTCCAGCGGCAGCAGGAAGAGGGAGACCAGCCTGTTCAGCAGCACAGAGAGACTGTCCATGTGAACTGCTCTGATGGAGAGTCGTGCGTGGTGTTTAGCTGTGAGGCTAACGGGCTGCAGAGAGACGGCAGAGCGATAGTGAGGGTGGCGGCTCGGCTGTGGGTCAACACCTTCTTACAGAGGCCGTATGTAAATTATGTCCTACTATCTACTGCATATTATGAGGTTGTGAATGTGCCTTCCAAGATTCAGCCAACAGTCTTTTCTAGAGGACATGCAGAGACAAACACCAGTGTGGTCTGGCGTCCAGACGCTCCAGGAGAAATGCCTGTGTGGTGGATTTTGGTGTCTGTGTTCGCTGGACTCCTGCTCCTGGCTATGCTGAGCATCATCTTCTGGAAGGTTGGATTCTTCAATCGTAATCGGCCTCCGactgatggtgctgatgatgaagatgagaaTGAGGAGCTTAATGCAGAGCAGTCCCCAGACCTTTAACCCTGATTGCAGCACTTCAACCAGTggcgaatatatata

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0007596 blood coagulation biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06476 ITGA2B, CD41; integrin alpha 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408171 lncRNA downstream 17089 1471553 ~ 1479940 (-) True G296810
TU408124 lncRNA downstream 196205 1283584 ~ 1300824 (-) True G296778
TU408118 lncRNA downstream 224169 1225478 ~ 1272860 (-) True G296774
TU408119 lncRNA downstream 244086 1248647 ~ 1252943 (-) True G296775
TU408083 lncRNA downstream 387546 1061727 ~ 1109483 (-) True G296742
TU408206 lncRNA upstream 4357 1550294 ~ 1550606 (-) True G296832
TU408236 lncRNA upstream 111661 1657598 ~ 1657967 (-) True G296860
TU408237 lncRNA upstream 116882 1662819 ~ 1663064 (-) True G296861
TU408241 lncRNA upstream 162550 1708487 ~ 1709020 (-) True G296865
TU408246 lncRNA upstream 183172 1729109 ~ 1729489 (-) True G296870
XM_022664984.1 mRNA downstream 3156 1393162 ~ 1493873 (-) True LOC103044891
XM_022664985.1 mRNA downstream 108320 1371515 ~ 1388709 (-) False LOC107197178
XM_022664987.1 mRNA downstream 108321 1373381 ~ 1388708 (-) True LOC107197178
XM_022664986.1 mRNA downstream 111265 1371515 ~ 1385764 (-) False LOC107197178
XM_007239303.3 mRNA downstream 135108 1359317 ~ 1361921 (-) True LOC103043375
XM_022665087.1 mRNA upstream 7469 1553406 ~ 1561400 (-) True LOC111191055
XM_022665064.1 mRNA upstream 299976 1845913 ~ 1857822 (-) False LOC111191047
XM_022665063.1 mRNA upstream 299976 1845913 ~ 1857822 (-) False LOC111191047
XM_022665065.1 mRNA upstream 299976 1845913 ~ 1849849 (-) True LOC111191047
XM_022664972.1 mRNA upstream 731429 2277366 ~ 2281361 (-) True LOC111191030
XR_002649323.1 other downstream 108321 1373381 ~ 1388708 (-) False LOC107197178
TU408330 other upstream 299976 1845913 ~ 1846761 (-) False LOC111191047
trnac-gca_40 other upstream 465470 2011407 ~ 2011478 (-) True trnac-gca_40
trnas-gcu_8 other upstream 465790 2011727 ~ 2011798 (-) True trnas-gcu_8
trnay-gua_55 other upstream 466003 2011940 ~ 2012011 (-) True trnay-gua_55
trnat-cgu_5 other upstream 735042 2280979 ~ 2281051 (-) True trnat-cgu_5

Expression Profile