RNA id: XM_022665078.1


Basic Information

Item Value
RNA id XM_022665078.1
length 1740
RNA type mRNA
GC content 0.45
exon number 4
gene id tmem205
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4356987 ~ 4363604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGGCGTGGCTACGCGGGAGGTGCCGTTTGTGCAACAAGGGAAATGCACATTCGCCTAAACAGCGAGGATTAACCCCAGAATTTCAGCTAAAGGAGAAATACAGCAGGACTTTACCATGGCCACTGAAGGGGACCCGTCAGACCTGGTGAAGGTGCTTCACCTGCTGGTGATGTCCTTCTCTTGGGGGATGCAGGTGTGGGTGTCCTTCATCGCAGGGTTTGTGCTGGTGTCTCAGGTGACTCTGCACACGTTTGGTTTGGTGCAGAGTAAACTCTTCCCCTGGTATTTCTACTGCCTGCTGGGCAGCAACACGGTCAGCCTGGCCATATATGCAGTGTATCATCCCAGGGAACTGCTGGACTGGCACGAGGCTATACAGATGACCCTGTTCTTTGTGGCAGTGATCATGGCAGGGCTGAATGCTCAGTGGTTCGGACCCGCTGTCACTGAGAACATGCTGGTGATGAGGGGGATCGAGCAGGAGCACGGTTTGGGTGGAGAAGTGGGCTTTGGAACCAACAGGGAGAGCTACGTTAAACTCCGCGAGCAGGACCCCAAATACAAAACCCACCGGACCAGCTTCTACCGCTACCACGGCCTGTCCAACCTGAGCAACCTGGTGGGCTTTGTCTGCAGCACCGTCAACCTCGTCTACCTTGCCCTTCAGCTGGCTTCACTATGAGACCAGTTCTGTCTTTAACGTGAAGCAGATTGAATGGtagtatttctcttttttttctaaactttatttctatttttatccccaatttagctaggtccattgtcccacccattcttCTGCTAACCAGCtgttactcagctgtatatcccccatcactagtgatgccacaacaccaggagggtgaagactagcatgactccgcctcttttcaaactgctgctgatgcagcattgccgagtagcatcacagcgctaacgctctgaggaaagcgcagcaactcggttctgatacatcagctcacagatgcagccttgtgctgatccacatcaccctaggagtaatgagggaaaagagcgccatctactgtacccacccagagagaataAGCAAgacctattgtgctctctcagggctccggcagctgatggcaagctgcatgactgggattggAACAGCGatttcccaatcatagtggcagcgcttagcccttCCTGTGATTTTGTAATTCCCATTAGGACTGTGCACCACACACTAATTCATTCACAGTTCATTCCATATCAATCAAACGATGGGACAGGTGAAAACAATTGATGATTTGAAATGTATGTATTACATtagtatgtaaatatattacttCTAAACAGGTTTATTAATGTACTTTGTATAACTAATGTGTATATAGTGAGATTTTAGAATGAGTCTGGTCGAGGGGCCATTTTAGTTTCTGAAACTTTGGATACACTGATTTAAGTGCCTACTTTTCCCTCTTGGCCTAATGAATGTTCTATATACTATCAAACTACAACACACTactacaaccccaaatcagttGAAGCTAAtcagacaaaatgtaaaaaaatatatttggttcATACactttacatacattttaaataaattacaatttgatttttagcatttttagatGGATCTcaattatttagttagttagtttctACTTATGTTGCGTATGCATTGATgtgtatttgctttttttccaagtttgtAATCATGATGGTTaatttgtagaaaataaatacatttttctaaatcTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409188 lncRNA upstream 1023 4352653 ~ 4355964 (+) True G297516
TU409158 lncRNA upstream 57540 4254206 ~ 4299447 (+) False LOC103041102
TU409159 lncRNA upstream 57540 4292357 ~ 4299447 (+) True LOC103041102
TU409161 lncRNA upstream 57540 4292357 ~ 4299447 (+) False LOC103041102
TU409157 lncRNA upstream 61380 4292357 ~ 4295607 (+) False LOC103041102
TU409209 lncRNA downstream 54372 4417976 ~ 4418769 (+) True G297529
TU409211 lncRNA downstream 67729 4431333 ~ 4435857 (+) True G297530
TU409212 lncRNA downstream 72462 4436066 ~ 4436423 (+) True G297531
XR_002649320.1 lncRNA downstream 76740 4440344 ~ 4443094 (+) True LOC111191027
XR_002649336.1 lncRNA downstream 94851 4458455 ~ 4475326 (+) False LOC111191048
XM_022665057.1 mRNA upstream 10390 4323111 ~ 4346597 (+) True cnn1
XM_022664963.1 mRNA upstream 61801 4253016 ~ 4295186 (+) False LOC103041102
XM_007238231.3 mRNA upstream 197525 4080149 ~ 4159462 (+) False LOC103038737
XM_007238229.3 mRNA upstream 197525 4080149 ~ 4159462 (+) False LOC103038737
XM_007238232.3 mRNA upstream 197525 4122520 ~ 4159462 (+) True LOC103038737
XM_022665106.1 mRNA downstream 4114 4367718 ~ 4392866 (+) True LOC103038197
XM_022665104.1 mRNA downstream 13506 4377110 ~ 4392866 (+) False LOC103038197
XM_022665107.1 mRNA downstream 38036 4401640 ~ 4414691 (+) True epor
XM_022664995.1 mRNA downstream 56393 4419997 ~ 4434071 (+) True znf653
XM_022664996.1 mRNA downstream 56393 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 61801 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 797536 3550344 ~ 3559451 (+) False LOC103030733
XR_002649344.1 other upstream 1678710 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2995052 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 3156199 1191763 ~ 1200788 (+) True G296679
XR_002649326.1 other downstream 56393 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 287039 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 1338950 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile