RNA id: XM_022665093.1


Basic Information

Item Value
RNA id XM_022665093.1
length 6534
RNA type mRNA
GC content 0.57
exon number 15
gene id LOC103038127
representative False

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3362434 ~ 3403563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGTTGTTAAAACGTTCAGCGTTAGGGCACGGTGCTGGGAGATGGTACGGCTGTAGatagttagctgggttagttGCTGGAGCTCCAACTCCAGGGTTAACTGCAACTCTTTCCCCCACCCCGTCAACGTCACCATCGCAGCCGTGGCGTCCCTCCGAAGCCAACAACATGGAGTCCGGGCTGCTCTCCGCGAGTACCGCCGCTTAGCCTTCGCACGAAGCCCGACACACAGCGCGCAGAGCCGGGGAACAGCCATGCCCAGCAGCTGCCGAGTTTACCCGCGACTCCAGCCCGAGCAGAGCCCGGGGAGCCGCGGCGTGTGACCGGCCGCAGGACCTTCCGAGGAGCCCGGGAGACTGGGGGACTGAGGCGGGAGGGCTGGCAGGCCGTTTGGAAGAGAAGATATGTAGGTGCAGTGCAGCAGACCAGAGCACTGGACCATGGAGCCTGCAGTAGGTCCTCTATCTGATATGGATCCCCACGATCCAGCATCCATCAGTGGGCCGTCAGCATCCCCACCTCTACTCAATAACAGCCTGCTGGGGGGACTGTCTCAAGGTGGTGGTCTGGAGAAGGGTGATGTAGAAGGGGATTCTGGGCTTCCAAGAAGCCTCCTTTCCAGAATCGAACCCTATGGGAACAGTCAGAGAAAACCTCGATCCTCAGCCTTCCCTTCATCTCTTACTTGGGACTCAGACTCGGAGAAAGAGACATTTGATGAAGAGGAGCTTCAGCACTTTTCTAATCCTCATGGCCTAGCTGCCCACAGTCCAGGAAGTCCCACCTGTGGACAGGAGCAAGATGGAATTGACTGTGGAGTTTACCAAACACCTGAGGCACCCAAGGACCTGCTCTTTAACAAGGACTTGGCCAGTCCTCTGGAGAGGAGAGATCAAGTGGAAAATGACAACGTCGGAAGTGCGTCCAACCAAGCTGGGTCACTTTTCTCAGACACAAAACCAAAGGAGGGATACCAAAAACAAGAAGACGAAaggaaagaggagaagaagaagctaCCCGAACGAGACGTCTACTCTTTTCCAGGTGACTCGGACCCGGAGAGTCCACCTCCAGGGCCGTGGGCACACTGCACCTTCATCCAGCGCCGGAGAAAGAAGAGAGCTTTACTGAGACCTTTCTCTGGACTGAACACCTGGCAACGCACGACTGGGGCGAACAGGAAAACCAGGTTAATCCCGGCCAGGACGAAGAGTCGGGCGAAGGTGGTGAACGATGAAGGAGGGGTGTTCGAATTCaaggaggaggaagatgaggaCGAGGACAAAGTCCAAGAGGCGGAGATTGGACAAGGACAACGGGGAGATCTGTGCCAGGATATTTTTACTTGTGTAGAATGTAGCATTTACTTTAAAAGACGAGCACATCTGCGGGAACACATGCGAGAGCATGTCCCAGATGGCGGGAGAAAGGGACAGGGTGGTGAGGAGGGCGTTAGGAGGAGGCGAGCCAAAAAAACTGGCTTTGAGTGCATGGAGTGTGGTCAGGAATTCTCAGACAGGCTGGTGTTGGTGGATCATCACAGGCGGCATCAAGAGGCACGGCGCAAAATCCTGGAAGAGATTGGAAAGCTGAACGAGGGAGGGACGGGGACGGAAGAGCAGGCCAATCGCAGGAAGCCAAGGCGTCTAGCCGCCCAAGAACCTTCCACCACCCCCGTCTGCGGACAGTTTGTCTGTCTCAAGTGCAACTACAGCTCTGATGTACCTCAAGAACTTGCAGACCACGCTAAGACTCATACGACTCGAGCAAAGGCTGGTTCTCCAAGAGCCGGTTCTCCAAGAGCCGCTTCCCCAAAAGCAGCTTCCCCTAAAGCAGCTTCACCTAAAGCAGCTTCCCCAAAAGCAGCTTCCCCAAGAGTCGCTTCTCCGAGAGATGCTTCCCGTTCCCAGCCAAGATCCCGCAAAAAAGGACAGACACGATCTTCTGGAACTGGTACCTCAAACCCTGCCAACACACTTCCTACAGAGAGGTATCCAACGAGAGCCTCGGTCCACGCTGTGGAAAAACAGCCTCAACAGCCTGAAGAGCCTCAAGTTGACCCCTCTCAGGCCAGTGCCAGTGACCGTCCTCCCATAAACGAGGGTGACTCCATTCCAGGGTCCATCCAGGATCGCACCGACTCTGCAACTCCAGAAGAACCAGCCACAAAACCAGAACTAGGGCCAGAACCAGATCCAGAGCCACAACTGGAGTTAGCAAGTGCTGATCCTGATACTGATGCTGCTGCTCCCCCAGAGGGTCCATCACTAAAGGAGGAATCTCCTGCAGAAGGGTCAACTAAAGCCGGTTCAGTAGAGGAGACCGTCCCAAAGCCCCAATCTCCTGTAACAGTACCTTCAAATCCAGAATCTTCAAATCCAGCTCCCTCAAATTCAGCACCTTCAAATACAAGAGCTGCACCACGCCGCAGGGAAGTAGCGTACAAGAGTACAGGGAAACGGCGCTCGAAGCGGGTTGTGAGGGACGCGATGGGCAGGACCCGAGCAAGTAGCAGACTGGAGTCGAAGCATACTGAGAGTAACGATGCTGAGAACCCAATCCAAAAAACTGAGCAGACAGTAGAGCAGGACCAAAAAGAGGCTGCACCACTACCAGAGCCAGAGGCTGATCCACAGTTGGCTAAAGAAATGGgtGGGCAGGATGAAGAGTCCGAAGCTGTTGTGAAGATGCCATTATTGGACAGTTTCCCCTCCAGCCCAAGGTCGAACAGCTCCTTCTCGGTTCAGCCGGAGAGCTCCGCTCCTGCAGACGAGATCGAGCCCAAGGTCTCCGGTTTGCATAAATGTGACGTCTGCAGTGCCACCTTTGAGACGCGGCGAGGTTTATCGAGCCACGCCCGCTCTCACCTGCGGCAGCTGGGGGTGGGCGTGTCCGAGAGCAGTGGAGCACCCATAGATCTTCTCTACCAGATCACCAAGGAGCGGACCTCCGACTCGGAGACCCCCGACACGCCCCTGCCGTGCCCCCCGGCTCCATCGCCCAAGAAGAGTCCTCCATCGCCCGTCCCCACGCCAGCGGAACCTGAGGAGGAACCGCAGGACATtaaaccccccctccccctgtCTGTTCTGGGTACCATAGTGAAAGTTCCCCCTTCCCCATCCAGCCCCTCCCTTGGCGGGTCTCTTCCCCCGTCTCCGTTCGGGAAGTCCCGCTCTCCGTCTCCGTCCCCCGTCCTGAGGAAAGCCCCCATCTCCTCGCTGCTGCCGGTGTCTTCCCCACTGCGCTCCCAGGAGCACAAGGCCATGTGCCGGGTCCAGACCTCCGCCTCGCTGTCCACTCCACCCAGACCGTTCTGGGCGCCGCAAGACTCAGACGCTCCTCTCAATCTCACGATGGAGATGGACCCTGATAAAGACATCACGTGTAAGCTGTGTGGCGCGTGGTTCGAGACGCGTAAGGGGCTGTCGAGTCACGCCCGGGCTCACCTGCGTCACTTCGGGGTGGAGTACTCCGAGTCTAAGGGTTCCCCCATAGACCTGCTCAACAGACTCATCCTCACCGACGACTTCAAACACAGAGTCGGCACTTTACTCCCCGAGAGCCCGGAGGACCTGAGGGTCCGGTGCCCCGCCGTGGCCCCTCCCTCTCCATCCGTATCCACGCCCACTTCTTCAGCCTCCAAGAGGCCCCTCCTCCCCAGCTCTCTCCTTTTTAAGACTGCAGCGTTAAGCAGCGGAGTCGGTCCCAAAGctacctcctcttcctcctcctcctctgctgCTCACGCCCTCTTAGCTCCGCCCACCAAGAAGCTGAAGCCTTCCCCTCAGCACGTCTTCCGTTTGAGTGGGAGGGAGCTGATGCCCATTCCTCTCCcAGAGCCGATGAAGGACGTGGGCTGTGAGTTCTGTGGGGAGCTTTTTGAGAACCGTAAGGGTCTCTCCAGCCACGCCCGCTCCCACCTGCGCCAGCTGGGCATCACCGAGTGGTCCGTCAACGGCTCGCCCATCGACACGCTGCGAGAGCTCATCGCCCGGCGCGGTCTGCCCTGCGTCACGCCCCTGAAACCCATCAAACTTCAGAAACCTCTTAAACCACTGAAGTCGCCCTCGTCCTCTCCAGGCCTGGGACCCCCTCGAGCCTCCCTCCAGTCCTCCACCCCGCAGTCGGGGCTCCTCGGCCGCCTGCCGTTCTCCTTCACCCACCCGCCCGGCCAGCACCAGCCCACCGCCCGCAAACAGCCCCCCTCAGCTTCTGCCACCAGCCCCTCCCCCACCCTGGTGCTGGTTAAGCCCAAGCCTGAGCCTGAGCCAGTGGAGGTCACTATAACTGAAGcagggatggagggatgtgACGGTTACGGGTCTGAACCCCTGCATTGCTCCAGCTGGAGCAGCTCGGGCAACGTGCATCCTATTAATCTGGTAATAGCCCAAGACAAGGAACCCTCGCGTGATATCCGCTGTGAATTCTGCGGCGAGTTCTTCGAGAACCGCAAGGGCCTCTCCAGCCACGCCCGCTCCCACCTGCGCCATATGGGCATCACCGAGTGGTCTGTCAACGGCTCGCCCATCGACACGCTGTGGGAGATCATGCGGAAGCAGGGCACCACCCCTGCGTCTGTCGCCCTGGGCGTGAAGGAGGAGCCGGGGCGGGACGGCAGCCCGTCCTGGGACACGCAGGCCTATCAGTCACCCAAAGTCTCACGCAAGTCTCCTCTGAACCTGCTCCACTCCGGATCACGCCTCCATAAGCACGGATTGGCCACCACGGGCCTGTCCGCCACGCCCCCTGCGGGGAAGTTCTTTGGGATGGCGCCGGTTGGGAAGAGGGTGGTCGGGTCTGAAGGACATCTTGGAGAAAGATCACAGTCGTTTAAGTCTAAGaccttctctcctcctcctccaccttcaACGCAGGATTTCTCTTATAAAGCCAAAGCGTCCACGGATAAGCATGGGGTAGGCCACATGGacGCTAGCTGTGAGCTGTGCGGTTTCTTCTTTGAGAACCGGAAGGCTTTGGCTAGCCACGCTCGCGCCCATTTGCGGCAGTTTGGCGTGACGGAGTGGTGTGTGAATGGTTCACCCATCGAGACGCTGAGTGCCTGGATGCGTAGTCGACCACAAACCGTAGCTGAGCTGCATCGCACTTACCTGCAGGGTGGACGCAGCGTCCAGAAGAAGGTGCACAAGAGGAGCCGttcctccctctctccgtcGTCTGACTCTGATCTCATGGCCCCGTTATCTCAGAAGTCTTCAGGAGCCCCGTGGTCATCCTTAGCTCTGTCTCAGGGCAGGGCAGTCAGACGGGACGCCCTGAACAGCTCCTGGGGATCATCACAGGCGGCAAACGTGAAAATTGGGACGGGAGCCTCGTCCCGGCACGGGATCAGCACACAGGGCCGGGGACATCACTCCAACAGCGCACTTCCACACGTCCAGGTAGCACGGAGTGAACTCAACGTCCGAGTGCCGCGGGGCATCGAGCGAAGGCCACTGAAACACCCGTCTCATGCTGACGGAGGGGAGAAAGAGAGCTGCCCCCCGAAACCCCCTCGTAGCAGTACTGTACCTGCCCTCGTGCCAAAGCCACCCTCCACCCCCCTCGTCAAACTTGTGGGTAAAATTTACTCCCTCAAGTGCCGgTTCTGCGACGTGGAGTTCCACGGCCCCCTCTCAGTGCAGGAGGACTGGATCAGACACCTCCAGCAGCACATTCTCAATCTCAACTACAACAAACCCGCCCCCACCGCAACCAACACTCAAACCAAACCCGAAACAGCTGCTCCTCAAACCCAAGCCTCAGCTactacctcctcctcctcaacaactactactaccaccaccactaaCAACAATACAGCTCCGACCCCCACCACGCCCGCACCTGCAAACACCCCAACCCCAACCTCCACAGCCCCGCCCCCTCTGGCCAGCCCTGGAACTCCCCCCACAGCAGAGCCACTGCGAGCTCCTGCCACATAGTACACGCCGTGATGTCTTACGTCTTATGATTTCGCCTTCCGTACCTTTCGTCCTATCTGCACTTCCTCTCAGACTGTTACAGACCAGTCTTTTCTATGTTTCTCTCTGTTATTTACGTGAAACAGAGCTTTCTGAAAAGCTTCGCCAGCCACCCACTCACCCTGACCCACTTAGCATGCAGCcggaaaggtagagtgaggctcCAGAGAGGCCAGTTTCCATGACAATGTTGGCTTTTCTGGCCGACAAAATATATAGAGCCATCAGTCAAGAGCGGGAGGGTCACAGAATCCTTTTCTCTACTTAATCTGACGCTTCTCTTCTTATACGTTCAGCCAGTTCTGCCTAATCAGACACAGTCGCTTATAGAGATGGACTGACTGTCTCTGGTGGTGAATTACTTCAGTAAACTTGCCGACTTCGCCCTGTGATTGGTTCTCAttgtagcttaaaaaaaaaaagaagcacttTAGTTTGATTAAAACTTGGCCTGTCACGATGagattttttgtggacgatatacaggggttgaacaatgaaaccgaaacacctggttttagaccacaataattggaataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408716 lncRNA upstream 49916 3311910 ~ 3312518 (+) False G297203
TU408717 lncRNA upstream 49916 3311910 ~ 3312518 (+) False G297203
TU408718 lncRNA upstream 49916 3311910 ~ 3312518 (+) False G297203
TU408719 lncRNA upstream 54266 3306169 ~ 3308168 (+) True G297203
TU408689 lncRNA upstream 143825 3217671 ~ 3218609 (+) False G297190
TU408751 lncRNA downstream 7693 3411256 ~ 3412085 (+) True G297218
TU408833 lncRNA downstream 162859 3566422 ~ 3640614 (+) False LOC103030733
TU408832 lncRNA downstream 163312 3566875 ~ 3584353 (+) False LOC103030733
TU408849 lncRNA downstream 257680 3661243 ~ 3664579 (+) True G297303
TU408865 lncRNA downstream 290135 3693698 ~ 3697530 (+) False G297318
XM_022665079.1 mRNA upstream 5194 3346445 ~ 3357240 (+) True LOC111191052
XM_007239581.3 mRNA upstream 20200 3332879 ~ 3342234 (+) True LOC103024726
XM_007239580.3 mRNA upstream 20200 3332879 ~ 3342234 (+) False LOC103024726
XM_022664974.1 mRNA upstream 35438 3228458 ~ 3326996 (+) True LOC103025443
XM_022665047.1 mRNA upstream 135263 3219929 ~ 3227171 (+) True LOC103025752
XM_022664976.1 mRNA downstream 146764 3550327 ~ 3567863 (+) True LOC103030733
XM_007241956.3 mRNA downstream 171070 3574633 ~ 3595371 (+) False ilf3
XM_007241958.3 mRNA downstream 171070 3574633 ~ 3595371 (+) False ilf3
XM_007241959.3 mRNA downstream 171070 3574633 ~ 3591403 (+) False ilf3
XM_015603960.2 mRNA downstream 171070 3574633 ~ 3591403 (+) False ilf3
XR_002649344.1 other upstream 684157 2674748 ~ 2678277 (+) True LOC111191061
TU408143 other upstream 2000499 1359112 ~ 1361935 (+) True G296790
TU407986 other upstream 2161646 1191763 ~ 1200788 (+) True G296679
TU407749 other upstream 3321543 36851 ~ 40891 (+) False LOC103026352
TU408827 other downstream 146781 3550344 ~ 3559451 (+) False LOC103030733
XR_002649321.1 other downstream 849453 4253016 ~ 4295186 (+) False LOC103041102
XR_002649326.1 other downstream 1016434 4419997 ~ 4434071 (+) False znf653
TU409249 other downstream 1247080 4650643 ~ 4675519 (+) False LOC111191039
XR_002649334.1 other downstream 2298991 5702554 ~ 5711874 (+) True LOC103033323

Expression Profile