RNA id: XM_022665108.1


Basic Information

Item Value
RNA id XM_022665108.1
length 5647
RNA type mRNA
GC content 0.56
exon number 31
gene id abca3
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5764999 ~ 5828725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtgtgtgtgtatgtgtgtgtgttagtagaATAGAATGGCCGGAGCGCCGCGGTGTTGTTCTCCGGTCCGGACCCGCAGCTCCCCGCACTCCGCCCGGTCAGCGCTCAGACACAGCGCCCGATGATCCGGCGGGTCTAGAGCGGGTTTACAGCGGGATTAGAGCGGGTTTACCGGTCGGTTCTGGTTCCGGAGAGCCGGGTTTTATCAGCTGGATCCTCGCTTTGTTTATAAGGTTGTGACGCTGTGATTATCAGGATGGCGCTGCTGCGACAGTTCAGCCTCCTTCTCTGGAAGAATTACCTGCAGCAGaaGCGTCAGATCTTGGTCACGATTGTGGAGATCGCCTTGCCCCTCCTCTTCTCCGCCATCCTGATCTACCTGCGTCAGATAGTGCCCTTCACCAACTACCCCAACGCCACGCACTTCAGGAGCTTCACTCCCGAGAACCTGCCTTTAGACCTCTATGGCCTGCAGCTGGCGTACGTTCCCGCCAACTCCAGCGTGGTGCGACAGGTGGCGCAGGACGTGCAGCTCAGTCAGATGAAGGGTTTCATCAGCGCTGTGCGTGGATTTGAGACTGAGGAGAAGTTTGAGGAGTTTGTAAAGACAGATCCTGAATCAGAGAAGATCCTGGCGGCAGTGGTGTTTGAGCATTCCTTCACTCATGATGATGAACCTCTCCCACTCCAGGTCAGCTATCACCTGCGCTTTACCTACAGCCCCAGAAATGCTCCCGCCAGGGAGAAATTCGAGCTGAATCCCAACAATGACCTGGACTGGCACACGCTCAGCCTTTTCCCACTCTTCCAGCTGCCTGGACCTCGAGAGCAGCATGATATCAAAGGAGGCACTCCAGGTTACTACAGGGAGGGCTTCCTGGCGATTCAGCACGCCGTGAACCGAGCCATCATGAAGGCGTATAACAGGACGGCAGCGTCGACCCTCCTCACCCAGACCCGAGTGCTGCTCTCCCGCTTCCCGTACCCAGCCTTCATCTACGACGTCTTCATCCTGGCCATTCAGAACCAGCTGCCCCTGCTGCTGGTGCTCAGCTTCACCTACACCTCCCTCAACATCGTCCGCGCCGTGGTGCAGGAGAAGGAGCGGAAGCTCAAGGAGTACATGCGTATGATGGGTCTCAGTAACTGGCTGCACTGGAGTGCCTGGTTCCTCAtgttcttcctcttcctctccattTCCATCATCTTCGTCacagtgctgctgtgtgtttggGTGAGTCCAAACGGAGCGGTTCTGACCTACAGTGACCCCTCTCTCGTATTCGTCTTCCTGCTGGTCTTCGCCGTGTCCACCATCAGCTTCAGCTTCATGATCAGCTCCTTCTTCTCCAGAGcGAATGTAGGCGCAGCAGCTGGCGGCTTCATCTACTTCTTCAGCTACCTGCCGTACCTGTTCCTGTGGCCCCGCTACGACCTGCTGTCTCACTCTCAGAAGGTCTCCGCCTGTCTCATCTCCAACGTGGCCATGGCTATGGGAGCCCAGCTTATCGGGATGTTTGAGGGCAAAGGTACTGGGATCCAGTGGAGTAACCTGTTTGATTCGGTAACTGTGGACGATGATTTCTCGATAGCTCAGGTTCtgggtctgctgctgctggacacGCTGCTGTACGGTCTGGTGGCCTGGTATGTGGAGGCTGTGTTCCCTGGGGAGTACGGGATGCCACGCCCATGGTACTTTTTTGTGCTGCCCTCGTACTGGTGCAGCAGCCCCCGCGTGGCTCTGGTGATggagaaggaggaagaggaggatgcaGAGAAAGCGCTGAAGGGAGAGTTTATAGAAGAAGAGCCGACTGGACTGGTGTCCGGAGTCAAGATCAAACACCTAGCCAAGGTTTTTAAAGTGGGCAATAAGTCCAAAAAAGCGGTGAAGGATCTCACTGTGAACATGTTTGAAGGCCAAATCACTGTGCTGCTGGGACATAACGGAGCCGGGAAGACCACTACACTGTCCATGCTGACTGGCTTGTTTCCTCCCAGTAGTGGCCGAGCCTATATTAATGGGTATGATATCTGCCAGGACATGGCGTTAATCCGCCGCAGTCTGGGTCTGTGTCCTCAGCATGATGTGCTTTTCGACAACCTGACCGTTCGAGAACACCTGCTCTTCTACACCCAGttaaAGGGCTATCCCCGCAGTAAAATTCCGGATGAGGTGGATCGGATTATTCGAGTCCTGAACCTGGAGGACAAGAGGAACTCCCAGTCCAAGACTCTCTCTGGTGGGATGAAGCGAAAGCTCTCCATTGGAATCGCCCTCATAGGAGACTCAAAGGTGGTAATGCTGGATGAGCCGACCTCAGGTATGGATCCGTCAGCTCGACGGGCCACGTGGGACCTGCTGCAGGGCGAGAAACGCGGCCGCACCATCCTTCTCACCACACACTTCATGGACGAGGCAGACCTGCTGGGCGATCGCATCGCCATCATGGCGGGAGGGGAGCTCCAGTGCTGCGGCTCGCCGCTCTTCCTCAAGAACAAATACGGTGCTGGATATCACATGGTGATAGTAAAGGACGCTCTGTGTAACGTATCAGAGATCACACGCCTCGTCCACATGTACGTCCCCAACGCCTCCCTGGAGAGCAGCGCCGGCGCCGAACTCTCCTACATCCTGCCTAAAGAGAGCaccagcaaGTTTGAGCTGCTTTTTGCTGAGTTGGAGATGAACAGAGAGGAGCTGGGCATCGCGAGCTATGGAGCTTCTGTGACCACCATGGAGGAAGTGTTCCTCAGaGTGGGGAAGCTGGTGGACTCCAGTCTGGATATTCAGGCCATTCAGCTCCCAGCCCTCCAGTACCAGCACGAGCGCAGGTCACATGACTGGACGGTGGACGACACCAGCAGCACTAGCGGTCTGACTGACGTGACGGATTTCACAGATAGCGGCACGCTCATCTCCGAGGACTGTTCCAACATCAAACTCAACACAGGGGCTAAGCTGTACATGCAGCAGTTCTACGCCATGTTCCTGAAGAGGGCGCTGTACAGCTGGAGGAACTGGAAGGTGATGGTGGCTCAGTTTTTGGTGCCGCTTATCTTCACCGTCGTGGCCTTGGTGGTGGCCCGTTTCCTGCCTGACCACCAGAACGCGCCTCAGCTTCGTCTAGCCCTCGGCCGATACGGCCCCACCACAGTGCCTGTAGCTCTGGATGCCGATGCGGGGCCCCTGGCTGTGGCCCTCGCCGAGGCCTACGCTGCACAGCTTCCTGCCCAGAGTGCCACGCCCACTACCAACCTAACAGATTTAGCGGAGTATGTTCTGTATAACGCCCTGCGGGAGGGCGGAGCCTTTAATGAGCACTGCGTAGTGGGAGCGTCTTTTCGAGGCCAAACCAGCAGATTTGCTGAAATCACCGCCTACTTCAACAACCAGGGCTACCACACCCCCGCCACCGCCCTCATGCTGGTGGACAACGCCCTCTACAGGCAGCTGGCCGGACCCAACGCCTCCATCCAGACCGGAAACTACCCCATGCCTCGAAACATGTCCGAGGCAGCGCAGAGCCAGCTGTCCGAgagtAAGACTGGCTTTGCGGTAGCGATTAATCTGATGTACGGTATGGCGTCTCTGGCCAGTACGTTTGCTCTGCTGCTGGTGAGCGAGCGCTCAGTGAAGTCCAAGCACGTCCAGCAAGTCAGCGGCGTCTACCTCTCCAACTTCTGGTTCTCTGCCTTAATCTGGGACCTGATCAACTTCCTGCTGCCTTGTCTGCTCATGCTGgTGGTGTTCCGGGCGTTTGCTGTGAAGGCGTTTGTGGATCAGAATCACCTGGTGGACGTgttgtttctgctgctgctgtacggCTGGGCCGTGATCCCCCTCATGTatctgctcagcttcctgtttTCCAGCGCTGCCACTGCCTACACCCGCCTCACCATCTTCAACATCATCAGCGGCACCGCCTCCTTCCTCGCCGTCACCATCATGTCCATCCCAGATCTGAAACTGCAGCATCTCTCCTTCATACTGGATAAAGTCTTCCTGCTGTTCCCCAACTACTGCCTGGGCATGTCCTTCAACCAGTTCTACCAGAACTACGAGACCATCAGTTTCTGCACCATCAACTTCTTCACCAAAGATATCTGCCAGCATCTCAATATCACGTATCAGCTGGATTATTTCTCAGTGGATGAGCCGGGCGTGGGGCGCTTCCTGATCGCCATGGCCCTGCAGGGTCTGGTCTTCCTCAGCCTCCTCTTCATCATCGAGCTGCAGTTCATCCGAACCTTTCTCAACCTGTGCAGGATCCGCAGGAAGcATGTGCTGGTTCTGGATGAGCCTCTGCAGCATGAGGATCGGGACGTGGCTGATGAGAGGAAGAGGGTACTGGAGTGTCAGCCGATGGTGGAGTCTATGGTGGGAAGCCCCCTCATCCTTCAGGAGCTCACCAAGGTATACCCGGGCTCTATGCGGGCGGTGGACTGTCTCTCTCTGGCCGTGGGGAAGGGCGAGTGTTTCGGTCTGCTGGGGTTTAATGGAGCGGGGAAGACCACCACCTTCAAAATGCTGACTGGAGATGAGCGTGTGACTGCAGGAGACGCCTTCATCGACGGATACAGTATCCTCAGAGACATCAAGAAGGTGCAGCAGCGGATCGGGTACTGCCCGCAGTTCGATGCCGTGCTGGATCACATGACCGGGCGGGAGACTCTGAGCATGTATGCCAGGCTGAGGGGCATCCCGGAGAAGTACGTCTCTTCCTGTGTGGAGAACGTGCTGCGCTCACTGCTGCTGGAACCCCACGCTGATAAACTGGTCCGCAGTTACAGTGGGGGTAACAAGAGGAAGCTGAGTGCAGGCATGGCTCTGATTGGTGGGCCGCCGGTCATCTTCCTGGATGAGCCGTCCACTGGTATGGACCCGGTGGCCAGACGCCTGCTGTGGGATGCAGTTACGCGCACCAGGGAGTCCGGCAAAGCTATAGTTATAACATCACACAGTATGGAGGAGTGTGAAGCCCTGTGCACTAGGCTGGCTGTGATGGTGAACGGACAGTTTAAGTGTTTGGGAAGTCCTCAGCATCTGAAGAGCAAGTTTGGCAGCGGCTACACGCTGTTGGCCAAAGTTCACACAGAGCCGGATTTAGAGGAGATGGACATCCAGCTCTTTAAAGACTTCATCGAGAGCACCTTCCCTGGAAGTGTGCTTAAAGATGAACACCAGGGGATGGTACACTACCACTTGACTGACAAGATGCTGACCTGGGCTCAGGTGTTCGGGACGCTGGAGGCGGCTAAGGAGAAGTACAGTATCGAGGACTACTGCGTGAGTCAGATTTCTCTGGAGCAGGTTTTCCTCAGCTTCGCTCAGTTCCGGCACTGCTCGGAGTTCCAGAAAAAACagtgagggggcggagcttccTCCTCGGGGTTTGATTTCCTCACTTCTGCCTTTTTTACGAGGGTCGAGGCTCGTCCTGCAGACGCGCTCGGGGTCCCAGAGCTCCGCCCCCTCGCCGTCTTattcacacagaaacacaggtaTTAACCACTGGAGCGGGGGTCCggactgagcatgtgcagtacagtacagtgagtgtgtgtgtgtgtttgtgtaactcGTGTGTCAGCCATTCcaacagtgtgtgagtgtttgtttgaatgaatga

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05643 ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409823 lncRNA upstream 2504 5758351 ~ 5762495 (+) True G297930
TU409817 lncRNA upstream 23792 5703734 ~ 5741207 (+) True G297924
TU409819 lncRNA upstream 33123 5730430 ~ 5731876 (+) True G297926
TU409808 lncRNA upstream 78450 5685435 ~ 5686549 (+) True G297916
TU409802 lncRNA upstream 140130 5623718 ~ 5624869 (+) True G297910
TU409831 lncRNA downstream 2112 5830837 ~ 5834140 (+) False G297933
TU409841 lncRNA downstream 2112 5830837 ~ 5834140 (+) False G297933
TU409935 lncRNA downstream 36812 5865537 ~ 5890766 (+) True G298007
TU409938 lncRNA downstream 44756 5873481 ~ 5874408 (+) False G298009
TU409937 lncRNA downstream 44985 5873710 ~ 5874408 (+) False G298009
XM_007232186.3 mRNA upstream 3523 5743788 ~ 5761476 (+) True ccnf
XM_007232197.1 mRNA upstream 45535 5719069 ~ 5719464 (+) True LOC103033642
XM_022665056.1 mRNA upstream 53125 5702512 ~ 5711874 (+) False LOC103033323
XM_022665055.1 mRNA upstream 53125 5702554 ~ 5711874 (+) False LOC103033323
XM_022665083.1 mRNA upstream 98570 5656766 ~ 5666429 (+) True dnaja3
XM_022665113.1 mRNA downstream 7780 5836505 ~ 5851771 (+) True LOC103034280
XM_022665112.1 mRNA downstream 38389 5867114 ~ 5884363 (+) True LOC111191062
XM_022665115.1 mRNA downstream 66041 5894766 ~ 5912389 (+) True LOC103034605
XM_022665114.1 mRNA downstream 88297 5917022 ~ 5930346 (+) True LOC111191063
XM_022665117.1 mRNA downstream 111522 5940247 ~ 5951494 (+) True rnps1
XR_002649334.1 other upstream 53125 5702554 ~ 5711874 (+) True LOC103033323
TU409249 other upstream 1089480 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 1330928 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1469813 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 2205548 3550344 ~ 3559451 (+) False LOC103030733

Expression Profile