RNA id: XM_022665112.1


Basic Information

Item Value
RNA id XM_022665112.1
length 1725
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC111191062
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5867114 ~ 5884363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTCAGTCTGACTGATGATAACAGGAGAACTTCTCTCTGCTCATCGTTTTATCTCCTCTTATCTGCTCTGATCTGCTGCTCTGATGGCTGTAGTGGAAGGTCTCCTCCTGCAGGCCACCAGTACGGGTCTGTTACTGGGAGCTCTGGTTCTGCTGCTGGTTTATTATCTGTCCTCCAGCTTCAGCTTTAAGGAAGAGGATAATGAGCCTCCAGGACCCAAACCGCTGCCCCTCCTGGGGAACCTGCTCCAACTGGACCTGAAACAACCCCACGAGTCCCTCTGTGAGCTCGCCAAGACGTACGGATCTGtgtttaaagtgtattttggTCCGAAGAAGGTGGTGGTTTTAGCGGGATATAAAACAGTGAAGCAGGCGCTGGTTAATCACGCTGAAGAGTTCGGAGAACGAGAGATTGGCAAATTGTTCAAAAACCTCTCTGAAGAACACGGTATTCTCTTCTCTAATGGAGAAAACTGGAGAGAGATGAGACGCTTTGCCCTCACCAACCTCCGAGATTTCGGCATGGGGAAGAGAGGGAGCGAGGAGAAAATCGTGGAGGAAATCCAGTATATTGTAGAAGAGTTTGGGAAATTTGAAGGTAAAGCGTTTGATACGACTCAGCCAGTGAACAACGCCGTCTCCAACATCATCTCCTCCATCGTTTACGGCAGCAGATTCGAGTACAGTGATCCTCAGTTCAAAGAGATGGTTAACAGAGCCAATGAGAACGTCAGGATTGGTGGATCTGCTCCAATCAGGctctACAACGTGTTTCCGTGGATCGGCCCGTTCCTGAAGAGCAAGCGAAAGctggagagaaacactgagaaaaacaGGAAGGAGATTAACGGGATCATCAGCTCCCTGCAGGAAACGCTTCATCCAGACGACCGCAGAGGATTCATAGACTCGTTTCTCGTCCGCAAACAGAGTGATGAGAAATCAGGACAGAAGAACTCTCGATTCAACGACAAGAACCTTTTAAGTACAGTCTTAAATCTCTTTGTCGCCGGAACCGACACTACCGGCACCACCCTGCGCTGGGGTCTGctgctcatggcaaagaacCCTCATATACAGGATAGAGTTCATGAGGAGATCGATCGGGTGATTGGAGGACGGCAGGTCGTGGTGGAGGACAGGAAGAGCCTGCCGTACACAGACGCCGTGATCCATGAAATCCAGAGATGTGCCAACATAGTACCCATGAGTCTCCCTCACGTCACCAGCTGTGATGTTCACTTTAACGGATTCTTCATCAAGAAGggTACAACAGTGTATCCTCTCTTGACGTCTGTACTGAGGGATGAGAGCGAGTGGGAGAGCCCCCAAACCTTCAACCCAGATCACTTTCTGGATAAACAGGGACGATTTGCTAAAAAAGACGCTTTTATGCCCTTTTCTGCAGgGCGCAGGGTGTGTCTGGGGGAGAGTCTGGCGAGGATGgagctcttcctcttcttcaccTCCCTCCTCCAACACTTCCGCTTCACTCCTCCACCAGGTGTCTCCAAGGATCAGCTGGACCTCACGCCAGTGAGCGGCATCACTCTGAACCCTTCACCTCACAAACTGTGTGCAGTAAAACGATCCTAATTCTGCTGATTTTGGGGAAATcagcattttgttttattttctccctTTATTCACTAGAACTCCCTTATATCAGTTGGCAGCATTATTAAGCACTCAGAAGAAAAGCAGCATGGCCTAGTGTCCTCT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409839 lncRNA upstream 32974 5767522 ~ 5834140 (+) False G297933
XM_022665113.1 mRNA upstream 15343 5836505 ~ 5851771 (+) True LOC103034280
XM_022665108.1 mRNA upstream 38389 5764999 ~ 5828725 (+) True abca3
XM_007232186.3 mRNA upstream 105638 5743788 ~ 5761476 (+) True ccnf
XM_007232197.1 mRNA upstream 147650 5719069 ~ 5719464 (+) True LOC103033642
XM_022665056.1 mRNA upstream 155240 5702512 ~ 5711874 (+) False LOC103033323
XM_022665115.1 mRNA downstream 10403 5894766 ~ 5912389 (+) True LOC103034605
XM_022665114.1 mRNA downstream 32659 5917022 ~ 5930346 (+) True LOC111191063
XM_022665117.1 mRNA downstream 55884 5940247 ~ 5951494 (+) True rnps1
XM_022665116.1 mRNA downstream 55892 5940255 ~ 5951494 (+) False rnps1
XM_022665101.1 mRNA downstream 69283 5953646 ~ 5964403 (+) True LOC111191058
XR_002649334.1 other upstream 155240 5702554 ~ 5711874 (+) True LOC103033323
TU409249 other upstream 1191595 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 1433043 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1571928 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 2307663 3550344 ~ 3559451 (+) False LOC103030733

Expression Profile