RNA id: XM_022665114.1


Basic Information

Item Value
RNA id XM_022665114.1
length 2970
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC111191063
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5917022 ~ 5930346 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgagggtgAGACAGATCTAAAGCTGAAGACATCGGCCCTCTCTTCACTGGataatattagtgtttttatgGTACTGGGTCTCAGGCGATGGGTGTGATGGAGGGTCTTTTTCTGGTACAGTCGAGCAGCACGGTGGTTTTACTCGGAGTGCTGCTGCTTCTCCTCCTTTACCTCCTTTCTTCTGGATCCGAGTCTCCAAAAGAGGGACAGGAGCCTCCAGGGCCGAGACCGCTGCCCATCCTGGGAAATCTGCTGCAGCTCAACCTCAAGACTCTTCATCTGAGCCTGTGTGACCTGTCAAAGAAATATGGCCCAGTCTTCAAGATacattttggacccaaaaaaatcgtAGTTCTGGCCGGATACAAGATGGTAAAGCAGGCGCTGGTGAACTGCGCTGAAGAGTTCGGAGAGAGGGACATCTTACCTGTATTCCACGATATGTCAAATAAGCTGGGAATCCTGTGGGCGAATGGAGAGAACTGGAAGGTGATGAGGCGTTTCACCCTCACTGCTCTGAGAGATCTGGGGATGGGTAAAAGAGgggtggaggagaaaattaTAGAAGAGATTCAGCACCTGAAAGCAGTGTTTAAAAGTTTTGATGGTAAACCATTCGAAACAACTCAGCCAGTCAACGTCGCTATCTCCAACGTCATCTGTGCCATCATCTACGGCAGCAGATTCGACTATGAGGATCCTTTATTTAAGGCAATGGTCCAGCGGTCCAACGAGAACATGAAGAATGCTGGCTCTGTTCCAATACAGctcTACAACGTGTTTCccaaactgtttaaaaacagtaagATGTGGGTGAAGGTTATGAAGGACTACAGGATTAATAGATGTGAAATGAAGCAGCTGGTGATGGGTCTGAAGGACAGTCTGAACGTGGAGGACTGCCGGGGCTTCATCGACTACTTCTACATCTGTAAGGCATCAGGGGAGAACAGTGTTCACTTGCATGAGGAAAATCTTCTGGCTACTGTCTCCAACCTGTTCATCGCTGGAACCGATACCACAAGTACAACCATCCGCTGGGGGCTACAGTACATGGCAAAATACCCTCAGATCCAGGAGCGGGTCCAGCAGGAGATCGATCGAGTGATTGGAGATCGTCAACCCAAAGTCCAGGACAGGAAGAATTTACCGTACACAGACGCAGTGATTCACGAAACCCAGAGACTCGCCAACATCGTACCCATGAGTCTCCCTCACGTCACCAGCTGCGACGTCACCTTCAACGGATATTTCATCAAAAAAGGAACCTCAGTGATGCCCCTGCTGTCCTCAGTCTTGTGGGACGAGAGCGAATGGGAGACGCCCAAAAGCTTCAACCCGGCTCACTTCCTCGACGCGGACGGTCGATTTGTTACTAGAGACGCCTTTATGCCCTTTTCTGCAGGGCGCAGGGTGTGTCTGGGGGAGAGTCTGGCAAGGATGgagctcttcctcttcttcaccTCCCTCCTCCAACACTTCCGCTTCACTCCTCCACCAGGCCTGACAGAGGATCAGCTGGACCTCACTCCAGTGGTCGGCTTCACGCTGAACCCGGCCAATCAGGGGCTCTGTGCCGTGCCCAGGATCTGACTGCTGAATCTGAGGCTGAGACTGCAGGCGAATCTGGATTGTTTGTGTTGAGATGCTGTTCACACTGTTATTTGTGATCGAGTGATTGGATTTACCTGTCTGGACATCACAACCTATCTGCAGATGTTGCTGTAGGTTTTAGACCCCTGCATTTTCCTCACTCTGGGTTTGAGCAGGTCgttgtttgttgtgttgtgaAACAAAAGACACGTTAAAACCTGATTAGAGAGTTCAGAGCGTCCAGACTGAGACACATTTCTACAAATCTGATTATGATCACATTTTAAACCACCTGCAAATATTCCAAATTCGTTATAGTTTAATGTGGTTTAATGTGGAGCAAcaattattgtttaaaatagctgtttttttttggtttgctttcccctgggtttggtttgttttcaaagAGTTTGGTTTATCCTGCATTTGTGaggtttggttgggtttgagTTTTAGTTTGGGACTGAGTTTAGTTTGGGTTTGAATTTTGGGTCTTGGTTTAAACTGATTTTGGGTTTGGGGTTCGAGTTTTGGATTTTTGTTTGTGGTCTGGGTCTGAGCTTTAGGTCTGGGTTTGAGTTGAGTTTGGTTTTGAGTTTTGGGTCCGGGTTTGAGTTGAGTTTGGGGTTGAGTTTTGGGTCTGGGTTAAAAGTTTTGGGTTTGTGTTTTGGGTCTGGTTTTGAGTTTTGGATTTGTGTTTTGGTCTGGGTTTGGGTTTGAGTTGAGTTTGGGGTTGAGTTTTGGGTCTCGGTTAAAGTTTGGAATTTGTGTTTTGGGTCTGGTTTGAGTTTTGAGTCTGGGTTTGAGTTTTGGGTTTGTGCGTTGGTCTGGGTTTACATTTTGTTTGGGTTTGAGTTTTGTTtgggtttgtgtttttctgctttGGTCTGGGTTTGAGTTTAGTTCAGGTTTGCGTTTTGGGTTTGTGTTTGCGTCTGGGTTTGGGTTTGAGTTTAGTTTGGATTAGAGGTTTGGGTTTGAATTTTGGGTCTGGGTTTGAGTTTTGGTTGGGGGTTTGTTTAGGTTTGGGATTTCAAATGTATCAAAAATGTATCGCAACAATTTGAATTGcaaaattttatacattttttaaaaacagtaccCGTTTTTGATGATCAGTTTAtgtgtaaagattggtgtcagaagtggtttattTAGTGTCCACTAGATATGTGTTGTTGTTCTTTGGTGCTCTCTTTTACTtagatttttataaatatatattttgaggggttttctaaaatttgattttaacaaTCAAAATGTATCGCcttgcttatgttttttttttttttttattaaattgtaactcctgtattgtgatatgtacTGTATCGCCAAGGAGGCAACATAAAGTAGATAACTTAAAGAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07423 CYP2W1; cytochrome P450 family 2 subfamily W1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409935 lncRNA upstream 26256 5865537 ~ 5890766 (+) True G298007
TU409931 lncRNA upstream 29907 5882321 ~ 5887115 (+) True G298004
TU409940 lncRNA upstream 42431 5873789 ~ 5874591 (+) True G298009
TU409938 lncRNA upstream 42614 5873481 ~ 5874408 (+) False G298009
TU409937 lncRNA upstream 42614 5873710 ~ 5874408 (+) False G298009
XM_022665115.1 mRNA upstream 4633 5894766 ~ 5912389 (+) True LOC103034605
XM_022665112.1 mRNA upstream 32659 5867114 ~ 5884363 (+) True LOC111191062
XM_022665113.1 mRNA upstream 65251 5836505 ~ 5851771 (+) True LOC103034280
XM_022665108.1 mRNA upstream 88297 5764999 ~ 5828725 (+) True abca3
XM_007232186.3 mRNA upstream 155546 5743788 ~ 5761476 (+) True ccnf
XM_022665117.1 mRNA downstream 9901 5940247 ~ 5951494 (+) True rnps1
XM_022665116.1 mRNA downstream 9909 5940255 ~ 5951494 (+) False rnps1
XM_022665101.1 mRNA downstream 23300 5953646 ~ 5964403 (+) True LOC111191058
XR_002649334.1 other upstream 205148 5702554 ~ 5711874 (+) True LOC103033323
TU409249 other upstream 1241503 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 1482951 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1621836 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 2357571 3550344 ~ 3559451 (+) False LOC103030733

Expression Profile