RNA id: XM_022665117.1


Basic Information

Item Value
RNA id XM_022665117.1
length 1342
RNA type mRNA
GC content 0.53
exon number 7
gene id rnps1
representative True

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5940247 ~ 5951494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGCGCTCAGAGCGCCGGAAATACACCCCCTCTGGAGCGGATAGGCGCAGGCGCAGTAGCAGCACGGAGAGAGTGCGCTTCAGTACAGGAACATGGCCCCATCACCTACCAAACGCAGGGAACGTTCAGAAGATAAAGGCAGAGAAAGGGGCAAAGAAAAGGCTGCAGCGAAGGAAGGTGctgagaaggagaaggagaaggagagggGCAGGGACAAGAACCGCAAACGCCGCAGTAACTCTactgggagcagcagcagcagatccagctccagctccagcagcagctctggATCCAGCTCTGGTTCATCCAGTGGTTCCAGCTCCTCCTCTGGCTCTAGCCGCTCTGGATCCTCCAGCTCTTCTCGCTCCTCCAGTTCCTCTGGTTCCTCGGGGTCGCCGAGCCCCAGTCGCCGCCGACACGACAACCGCAGACGCTCACGGTCAAAGTCCAAATCGCAGAAAAGGGGAGAGGAGAAGGAAAGGAAGAGGAGAAGTCCGAGTCCGAAACCTACCAAACTTTGCCTGGGAAGACTGACCAGGAATGTCACGAAGGATCACATCCAAGAGATTTTCTCCACCTACGGGAAGATCAAAATTATTGATATGCCACAAGACCGGTTACATCCAAACTTGTCCAGGGGCCACGCCTATATCGAGTTTGAGACCCCAGAGGAGGCCCAGAAGGCTCTGAAGCACATGGATGGAGGTCAGATCGATGGTCAGGAGATAACAGCTACAGCTGTCCTGACCCCCAGGATACGCCCTGCTCCCCGCAGGATGACTCCTCCACGCAGGATGCCGCCTCCACCCCCGATGTGGCGTCGAACTCCACCACGCATGAGGAGAAGgTCTCGTTCGCCTCGTCGTCGCTCTCCAGTGAGAAGACGCTCTCGCTCCAGATCTCCGGGCCGCCGACGCCATCGCTCACGCTCCAGCTCCAACTCCTCACGATAGAGAGGCTCTTCTCACACCTGACGAAGCTTTTAGTGCAGCGATGCACCTTCACTTCACCACCAACAGAGCAGAAACTGCAGGGCCTGATCTGAACGCGGACAGAAACCGTTAACGTTGCATCAGAAACGATTAGTCATTCgtaaaaatccatatttttcCCCCTTCAGGATTTATTTGTACCTGAAATCCCCTGTCATCACATTATCATACCCACTGAAGTGAAAGAGCgtagttttttcttttcctctgtgAGCCTACTGTGCGTACTGAGTGGAAGTTTcgtattttatcatatttttacatAACTTTGAGGTTAAACCTAACTCTGATGAGActtgatttttttctgtattttggatcatcaattAAAACGTTTCTTTACAAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14325 RNPS1; RNA-binding protein with serine-rich domain 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409935 lncRNA upstream 49481 5865537 ~ 5890766 (+) True G298007
TU409931 lncRNA upstream 53132 5882321 ~ 5887115 (+) True G298004
TU409940 lncRNA upstream 65656 5873789 ~ 5874591 (+) True G298009
TU409938 lncRNA upstream 65839 5873481 ~ 5874408 (+) False G298009
TU409937 lncRNA upstream 65839 5873710 ~ 5874408 (+) False G298009
XM_022665114.1 mRNA upstream 9901 5917022 ~ 5930346 (+) True LOC111191063
XM_022665115.1 mRNA upstream 27858 5894766 ~ 5912389 (+) True LOC103034605
XM_022665112.1 mRNA upstream 55884 5867114 ~ 5884363 (+) True LOC111191062
XM_022665113.1 mRNA upstream 88476 5836505 ~ 5851771 (+) True LOC103034280
XM_022665108.1 mRNA upstream 111522 5764999 ~ 5828725 (+) True abca3
XM_022665101.1 mRNA downstream 2152 5953646 ~ 5964403 (+) True LOC111191058
XR_002649334.1 other upstream 228373 5702554 ~ 5711874 (+) True LOC103033323
TU409249 other upstream 1264728 4650643 ~ 4675519 (+) False LOC111191039
XR_002649326.1 other upstream 1506176 4419997 ~ 4434071 (+) False znf653
XR_002649321.1 other upstream 1645061 4253016 ~ 4295186 (+) False LOC103041102
TU408827 other upstream 2380796 3550344 ~ 3559451 (+) False LOC103030733

Expression Profile